Gossypium hirsutum (upland cotton): 107953086
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Entry
107953086 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107953086
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03020
RNA polymerase
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107953086
09124 Replication and repair
03420 Nucleotide excision repair
107953086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107953086
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107953086
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107953086
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107953086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TOD1_MUCI70
RNA_pol_L
3HCDH
Motif
Other DBs
NCBI-GeneID:
107953086
NCBI-ProteinID:
XP_040958990
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All DBs
Position
D10:complement(9373714..9376927)
Genome browser
AA seq
298 aa
AA seq
DB search
MVLFPTINEACRVLDEGVVARASALDVASVLGMSFPSYCFGCSGGIMFRADTVGSKHIYL
SLKKWSERYGSYFKPSRCLEERAMKGMPLVNETAVIHCGFYNENGGFKIFDEDKSYMQSC
KVAVSICAFGGGDDLYQPIGMSEASLKKVCYVQDFLLLQNGRIDYGEFVAMVLIFSLLAD
CTADPEYDDFIKCRAMILFFDIDPNTQQVVVVDPEAYTYDDEVLKKAEAMGKPGFVEIYA
KEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMQGG
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atggtattgtttccaacgattaacgaggcatgtcgtgttttggatgagggtgtcgttgct
cgagcatcagcccttgatgttgcatctgtactcggaatgagcttcccatcctactgcttt
ggttgcagtggtggtatcatgttccgggcagatacagttgggtcgaagcatatctatttg
agcctcaagaaatggtcagaaaggtacggtagctactttaaaccatcgagatgtttggaa
gaaagagccatgaaaggcatgccactggtgaatgagaccgccgttatacattgcggtttt
tataatgaaaatggtggttttaaaatatttgatgaagacaaaagttatatgcaaagttgc
aaagttgcggtttctatttgtgcgtttggtggtggagatgatctttatcaacctatagga
atgtcagaggcatcacttaaaaaggtttgctatgttcaagattttctgcttctacagaat
ggaagaatcgattatggtgaatttgttgccatggtactaattttcagtttgttggcagat
tgtacagcagatccagaatatgatgacttcataaaatgcagagcaatgatcttattcttt
gacattgacccaaatacccaacaggttgtggtggttgatccagaggcgtatacctatgac
gatgaggtgctaaagaaagctgaagctatgggcaagccaggttttgtggagatatatgcc
aaagaagacagtttcatctttacagttgaatccactggtgcgatcaaagcttctcagttg
gttcttaatgctatagaaatcttgaaacagaagctggatgcagttcgcctgtctgaggat
actgtggaagctgatgatcagtttggtgaactaggtgcccatatgcaaggaggatga
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