KEGG T04793: 107953099

Gossypium hirsutum (upland cotton): 107953099

Entry

107953099         CDS       T04793

Name

(RefSeq) DNA-directed RNA polymerase II subunit RPB7

K03015

DNA-directed RNA polymerase II subunit RPB7

Organism

ghi Gossypium hirsutum (upland cotton)

Pathway

ghi03020

RNA polymerase

ghi03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:ghi00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107953099
  09124 Replication and repair
   03420 Nucleotide excision repair
    107953099
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107953099
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107953099
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107953099
Transcription machinery [BR:ghi03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     107953099
Messenger RNA biogenesis [BR:ghi03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107953099
DNA repair and recombination proteins [BR:ghi03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107953099

SSDB

Motif

Pfam:

SHS2_Rpb7-N S1

Other DBs

NCBI-GeneID:

107953099

NCBI-ProteinID:

XP_016743812

UniProt:

A0A1U8NXX2

LinkDB

Position

A08:complement(431750..435017)

AA seq 176 aa
MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR
DGTGFVTFPVKYQCVVFRPFKGEILEAAVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTTA

NT seq 531 nt +upstreamnt +downstreamnt
atgttttttcacatagtattagagaggaacatgcaattgcatccacgccacttcggtcgt
aacctacgggaaaacctcgtatccaagctcatgaaagatgtcgagggcacttgcagtggt
agacatggttttgtggtggcaataacgggtatcgaaaacgttgggaaaggtttgattcga
gatgggaccgggtttgtgacattccctgtgaagtatcaatgtgttgttttcagaccattt
aaaggggaaatcttggaagctgctgttactatggtgaacaagatggggttctttgccgaa
gccgggcctgttcaaatttttgtttcgaaccatttgattccggatgatatggagtttcaa
tccggagatatgccaaattatactacgtctgatggatcggttaagattcaaaaggacagt
gaagttcgcttgaagataattggaactcgagtagatgctactgaaatattttgtattgga
accataaaggatgatttcttgggtgtgattaatgatccgacaacagcttaa

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