KEGG   Gossypium hirsutum (upland cotton): 107953738
Entry
107953738         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107953738
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107953738
Enzymes [BR:ghi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107953738
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     107953738
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 DUF2002
Other DBs
NCBI-GeneID: 107953738
NCBI-ProteinID: XP_016744620
UniProt: A0A1U8P0H1
LinkDB
Position
D07:3881793..3887803
AA seq 1204 aa
MGASPDGKGNVGMGSTSGEKFANGTDLNMDIDEDDDVFDELVSVQELGEEFLRNFCRKAA
VSFFNQYGLVSHQINSYNDFIKYGLQNTFDSFGEFVIHSGYDPSKKGEGDWRHARVKFGK
VTVERPTFWAVTGGNELNMLPRHARLQNMTYSSRMKVTVELQVYTAKSVKSDKFKTGREE
IVEEEIVHQDNREIIIGRIPVMVKSELCWMNEVEKSDCDFDHGGYFLIKGAEKIFIAQEQ
ISLKRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKVEYIKGGEKILTVFFLSIEIPVWI
LFFALGVRSDKEVVSLIDYGSSDSSISNILFASIRDADWKCRNFREESAALNHLDRLCKE
TRFPPEESVEECLGKYLFPSLKGFKQKARFLGYMVKSLLQAFTGHRKCDNRDDFRNKRLE
LAGELLEREMKVHIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAW
SHPYKKMERISGVVANLGRANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLS
TPDGENCGLVKNLATTALVSTNIVKSVVESIVDTLFDSGMEKVVNDTSSSLDGKDKVFLN
GEWVGVCEDSLFFAAELRRKRRRKELPYQVEIKRDEHKGEVRIFTDAGRILRPLLVVENL
FKLKAFKGKENYAFQPLLDKGIVELIGAEEEEDCHTAWGIRYLLTEVEGKQPVKYTHCEL
DMSFLLGLSCGIIPFANRDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQMYYPQRP
LFHTMTADCLGKSGFPLGQNRLEPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASIERG
MFRTEHVRSYKAEVDNKEIQEKRRKAEDIVNFGKTESKIGRVDSLDDDGFPYIGASLQSG
DIVIGRFAESGADHGVKLKHTERGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSM
HGQKGVLGFLESHENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKKH
ATPFSTLSIDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAEDKV
KFRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAHGASANLHERLFTLSDCSQMHVC
QNCKNAANVIERTVAAGRKIRGPYCRVCQSGDEIVKVSVPYGAKLLCQELFSMGISLKFE
TQLC
NT seq 3615 nt   +upstreamnt  +downstreamnt
atgggggcttcgccagatggaaagggaaacgtgggaatgggcagtactagtggtgaaaag
tttgcaaatggaactgatttgaatatggatatagatgaagatgatgatgtgtttgatgag
ctggtcagtgtgcaagagctgggagaagagtttttgaggaatttctgtaggaaagctgcc
gtgtctttcttcaatcagtatggtctagtaagtcatcaaataaactcttacaatgatttc
ataaaatacggtctccagaacaccttcgactcctttggggagtttgttattcattctggt
tatgatccatcgaagaagggagaaggtgactggcgtcatgccagagtgaagtttgggaaa
gtcaccgttgagaggccaaccttttgggctgtcacaggtggcaatgagctcaacatgctt
cctaggcatgcccgccttcagaacatgacttactcatccaggatgaaggttactgttgag
cttcaggtatatacagcaaaaagtgtaaagagtgacaagtttaaaactggaagagaagaa
attgttgaagaggagatcgtgcatcaagataacagggagattataattggaaggatccct
gtgatggttaagtctgagctgtgctggatgaatgaggttgaaaagtctgattgtgatttt
gatcacggaggttattttctcatcaagggcgcagagaagatattcattgcacaagagcaa
atctctctgaagaggctctggatttcaaacatacagggctggactgttgcctacaggtcg
gaggtgaagagaaataggctaattatcagactagtggagaattccaaagtagaatatatc
aaagggggggagaaaatcctgactgttttcttcttgtcgattgagatccccgtttggatt
ttattttttgcccttggtgtacgatcagacaaggaagttgtaagtctgattgattatgga
agcagtgattcaagtatatcaaacatactgttcgcgtcgattcgtgatgctgattggaaa
tgccgcaattttcgtgaagaaagtgctgctctcaaccatttggataggttatgcaaagaa
actagatttccccccgaagaaagtgttgaagagtgccttggaaagtatctgtttccctct
ctcaaaggattcaagcagaaggctcggttcttggggtacatggtcaagagtcttttgcaa
gcattcaccggtcatcgaaaatgtgacaatagagatgattttaggaacaagaggttggag
ttggccggtgagctgcttgagcgtgagatgaaagttcatattgcccatgcaaggagacgt
atggcaaagactctgcagagggatctttatgcggatcgtactgttcgtccaattgagcat
tatcttgatgcttccatagttacaaatgggctctctagagcattttctactggagcttgg
tcgcatccttacaaaaagatggaaaggatatcaggtgtagtggcaaatctcggacgagca
aatccattgcagacaatggttgatttgagaaaaacacgacagcaggttcagtacactgga
aaggtcggagatgcgagatacccacatccttctcattggggaaaagtttgctttctctct
actcctgatggtgaaaattgtgggcttgttaagaatctggctaccactgctcttgtgagt
acgaacatagtgaaatccgtagtggaatccatagtcgacacgttgtttgattctggaatg
gagaaagtggttaatgatacttcaagctcacttgatgggaaagataaggtctttctgaat
ggggaatgggttggtgtttgtgaagattctcttttctttgctgctgaacttagaagaaaa
cgacgcaggaaagaattgccgtatcaggtggaaattaaaagagatgagcataaaggagag
gtgcggatctttactgatgctgggaggattctacgcccgcttttagttgttgaaaatctg
ttcaaactaaaagcattcaagggcaaggaaaattatgctttccagccccttttagacaag
gggattgttgaactcattggagctgaagaggaagaagattgtcacacggcatggggtatc
aggtacctcttaaccgaagttgaggggaagcaacctgtcaagtacacgcattgtgagctg
gacatgtcatttcttttgggtttaagctgtggaatcattccatttgccaatcgtgatcat
gcgcggagggttctttaccaagcccagaagcattctcagcaggcaattgggttctctaca
acgaacccaaacatcagggtggacactttgtcgcaccagatgtattatccccaaaggcca
ctcttccatacgatgactgctgactgtcttggtaaatctggatttcctcttggtcagaat
agattggaaccgaagccagaactctacaatggccagaatgctattgtggctgtaaatgtt
catctcggttacaaccaagaggattccttggtaatgaaccgggcctcgatagagcgtggg
atgttccgcaccgaacatgtaagaagttacaaagctgaagtagataacaaggaaatccag
gagaagaggcggaaggctgaagatattgtaaactttggaaaaacagaaagtaagattgga
cgggtggacagcctcgatgatgatggttttccttatatcggtgcttccctgcagtctggt
gacattgtcattgggaggtttgcagaatctggagctgatcatggtgtaaaactgaagcac
accgaaagaggcatggttcagaaagttgtgttatcttcaaatgatgatgggaaaaatttt
gctgtggtgtctctgagacaggttcgttctccctgtcttggagacaagttctcaagcatg
catgggcaaaagggggtccttggttttctggagtctcatgagaactttcctttcacaact
caaggaatagttcctgatatcgtgattaacccacatgcatttccttcacgacaaacgcca
ggtcaactcttggaggctgccttgggaaaggggattgcctgtggtgggtcgaagaaacat
gccacccctttctccactctctccatagatgccattacagaacagcttcacagggctggg
ttttcaagatggggaaatgagagagtttacaatggtcggactggtgagatggttcggtca
ctcatatttatgggtccaacattctaccagcgtcttgtccacatggctgaagacaaagtg
aaatttcgtaacactggacctgtgcacccacttacaaggcagccagttgcagaccggaaa
cgttatggcgggatcaaatttggtgagatggagcgggactgccttattgctcatggtgca
tcagccaacttgcatgagcgcctcttcactcttagcgattgctcacagatgcatgtatgt
cagaattgcaaaaatgctgcaaatgttattgaacggaccgtagcagctggtcggaagatt
aggggaccctattgccgggtttgccagtcaggggatgagattgtgaaggttagtgtgccg
tatggtgccaagttactgtgccaggaactattcagcatggggattagtctgaaatttgag
acacagctttgttga

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