Gossypium hirsutum (upland cotton): 121230897
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Entry
121230897 CDS
T04793
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03020
RNA polymerase
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121230897
09124 Replication and repair
03420 Nucleotide excision repair
121230897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
121230897
03400 DNA repair and recombination proteins [BR:
ghi03400
]
121230897
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121230897
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121230897
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121230897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
121230897
NCBI-ProteinID:
XP_040972371
LinkDB
All DBs
Position
A06:127598984..127607336
Genome browser
AA seq
1189 aa
AA seq
DB search
MEDDSEYDPQLMEDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEF
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
SYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRETPEDGGWHDLV
AKGFIEYIDTEEEETTMISMTINDLVQARINPEEAYSETYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RATTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSKRDHSIS
LRHSETGIVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH
KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEPPKDQKKKGA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacagtgagtacgatccacagctaatggaagatgaagacgacgaggagatc
acgcaggaagatgcgtgggcggttatctctgcttacttcgaagagaaaggtttggtgcgt
caacagctcgactcgttcgatgagtttatccaaaacacgatgcaggaaattgtcgatgaa
tcggctgatatcgagatcaggcccgagtcacagcataatcctggtcatcagtctgacttc
gctgagactatctataagattagctttggtcagatctatctaagtaagcctatgatgact
gagtcggatggtgaaactgcaactttatttccaaaagctgcaaggttgcggaatctcact
tactctgctccattgtatgtcgatgtaactaaaagagttattaaaaaaggacatgatggt
gaagaagtcactgagactcaagattttaccaaagtgttcatcggaaaggttcctataatg
cttcgttcgagttattgcacactatatcaaaattcagagaaggatctgactgagcttggg
gagtgtccatatgatcaaggtgggtatttcattatcaatgggagtgaaaaagttctaatt
gcccaagagaagatgagcacaaatcatgtctatgtcttcaaaaagaggcaaccaaacaaa
tacgcctatgtagcggaagttcgatccatggcagagtcccaaaataggccaccaagtacc
atgtttgtgcggatgctttcgcggacgagtgccaaagggggctcttcagggcagtacatt
cgtgctactcttccatatattcgtactgaaattcctatcataatcgtgttccgggctttg
ggatttgttgctgacaaggatatattagagcatatatgctatgacttctctgatacccag
atgatggagcttcttcggccttccttagaagaggcatttgtgattcaaaaccagcaggtt
gcattagattatatcggtaaaagaggagcaactgttggtgttaccagagaaaagaggatt
aagtacgcaaaagagatccttcaaaaggaaatgctccctcacgttggtgttggagagttt
tgcgagacaaagaaagcttattattttgggtatatcattcaccggctgcttctttgtgca
cttggccgaagggcagaagatgatagagatcattatggcaacaagaggctggaccttgct
ggtcctttacttggaggcctctttaggatgctttttcggaagttaactagggatgtaaga
tcttatgtgcagaagtgtgtggataatggaaaggatgtaaacctgcaatttgctatcaaa
gcaaaaactattacaagtggtcttaaatactcactcgctactggaaattgggggcaagca
aatgcagcgggtacaagagctggggtgtcacaggtgttaaatcgtttgacatatgcctcc
acgttgtcgcacttgcgaaggctcaattctcctataggacgtgaagggaaattggctaag
ccacgtcagttgcataactcacagtggggaatgatgtgtccagctgaaacaccagaagga
caggcctgtggacttgtaaagaatcttgccttgatggtgtacataactgttggatcagct
gcatatcctattcttgaatttttggaagaatggggtacagagaattttgaggaaatttca
cctgcagttattcctcaagctacgaaaatttttgtcaatggttgttgggttggtgtgcat
cgaaatcctgatatgcttgtaaccacattgagacggctgagaagacgggttgatgtcaac
actgaagttggtgttgttcgagatattcgtttgaaagaacttagaatatatactgactat
ggccgttgcagtcggccattgttcattgtggagaagcaaaggcttctaataaaaaagaaa
gacatccatgcattgcaacaaagggagacccctgaagacggtggctggcatgatcttgta
gcaaagggatttattgaatatattgacacagaagaagaggaaacaactatgatttccatg
accatcaatgatcttgtccaagcaagaatcaatccagaggaagcttattctgaaacttat
acccactgtgaaatccacccttcactgattttgggtgtttgtgcttcaattataccattc
cctgatcataatcagtccccacgtaatacctatcaatctgctatgggtaagcaagcaatg
ggtatatatgtcaccaactaccaatttcgaatggatacattggcctacgttctctactat
ccccaaaagccacttgttactacacgagctatggaacatctccattttcggcagcttcct
gctggcattaatgctattgtggccattgcctgctattctggatataaccaagaagattct
gttatcatgaatcaatcatcaatagaccgtggattcttccgatcacttttcttccgttct
taccgggatgaggagaaaaaaatggggaccctcgtcaaagaagatttcggccgaccagat
agggctaccactatgggaatgaggcatggctcttacgataaattggatgatgatggtctt
gcacctcctggaacaagagtttcgggtgaggatgtaattattgggaagaccacacctatt
tcacaggaggaagctcagggtcaagcatcacgctattcaaaacgtgatcatagcataagc
ttacgacacagtgaaacaggcattgtggaccaggttctattgacaactaatgctgatgga
ttgagatttgtgaaagtaagagtaagatccattcggattccccagattggagataagttc
agtagtcggcatggtcaaaagggaacagttggcatgacttacacccaggaagacatgcct
tggactgtggaaggcatcacacctgatatcattgtgaatccacatgctattccttcccgt
atgacaatcggtcagcttattgagtgtattatgggaaaagttgccgctcacatgggcaag
gaaggtgatgcaactccatttacggatgtcactgtggacaatatcagtagagcacttcat
aaatgtgggtatcaaatgcgtggtttcgagaccatgtataatgggcacacaggcaggcgg
cttactgctatgatattcttgggacccacgtattaccaacgactaaagcacatggtcgac
gataagatccattcacgtggtcggggtcctgttcaaattctaacgaggcaacctgcagag
ggacgttctcgtgatggtggtcttcgttttggagagatggaacgagattgcatgattgca
catggtgctgcccatttccttaaggaaagattatttgaccaaagtgatgcatacagagtc
cacgtttgtgaacgatgtggattgattgctatcgcaaatctaaaaaagaactcgttcgaa
tgcagaggatgcaagaataaaaccgatatagttcaggttcatattccttacgcttgtaaa
ctgctgttccaagagcttatggcaatggcaatcgctccaagaatgcttacgaaggaaccg
cccaaagaccagaagaagaaaggagcgtga
DBGET
integrated database retrieval system
