Girardinichthys multiradiatus (darkedged splitfin): 124860291
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Entry
124860291 CDS
T08099
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04010
MAPK signaling pathway
gmu04210
Apoptosis
gmu04218
Cellular senescence
gmu04620
Toll-like receptor signaling pathway
gmu04621
NOD-like receptor signaling pathway
gmu04622
RIG-I-like receptor signaling pathway
gmu04623
Cytosolic DNA-sensing pathway
gmu04625
C-type lectin receptor signaling pathway
gmu04920
Adipocytokine signaling pathway
gmu05132
Salmonella infection
gmu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124860291 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
124860291 (nfkb1)
04218 Cellular senescence
124860291 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
124860291 (nfkb1)
04621 NOD-like receptor signaling pathway
124860291 (nfkb1)
04622 RIG-I-like receptor signaling pathway
124860291 (nfkb1)
04623 Cytosolic DNA-sensing pathway
124860291 (nfkb1)
04625 C-type lectin receptor signaling pathway
124860291 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
124860291 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124860291 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
124860291 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmu03000
]
124860291 (nfkb1)
Transcription factors [BR:
gmu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
124860291 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
124860291
NCBI-ProteinID:
XP_047209433
LinkDB
All DBs
Position
23:50681437..50731136
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AA seq
923 aa
AA seq
DB search
MAADDHYLHASNQIFANMINDSPWELSQFATMPHTTSLQSVDGPFLQIVEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNRKTYPTVKICNYQGQARVVVQLVTALTPLPQLHAHSLVGKQ
CEKGICIADLQSKDSTISFPNLGILHVTKKNVAKTLEERMVEAFRMGYNCGVSIHPDIDI
LQGEVRVPRELNDHQRTVISSAAANQAKEMDLSVVRLIFTAFLPDSDGGFSRRLEPVVSE
PIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDSGLIWEAL
GDFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQVIDKE
EVQRKRQKTLPNFQDFSGGGGGLYRGGGPTAGGGGPGSAGGGGYYQGFTSYNYGGGGGGG
GGGGGGGFSTAYSAGLGGGGMKHALRSDAADDSDPDDDPTSGAVVRGSTQPGGREEEERS
KEGGTSVEPGADDLLMEATRMQLDALFRYSITGDSAYLLAPQRPLMMAQNEDGDTGLHLA
VLHSQQEALMSLTQVVSALAGEEVLNMRNHLYQTPLHLAVITQQKEAAEVLLLAGADPTL
TDCRGNTVLHLAAQQEGGGMVELLLRRRELRKLLQCSNTAGLCAIHLAVLADRLQALREL
LAGGADVEAQERSCGRTALHLATETNNVSLAGCLLLEGNAKVDCCTFNGSAPLHIAAGRG
SVKLTALLMAAGADPQRENFEPLFFREEEEEDCEGDDDEGYIPGTTPVNMATSSEVLDLL
NGHEYKPKTQQAFVPPEGDLSGLDAQVKQAVCRALETGGCWENLAHSLGLGILNTAFRLS
PSPAKTLLDSYEVSGGTISDLLTALRSAGECKALSILKEALCQNQGRSGDPAAEDLCPQV
QNLKVDAQIDSGVCDSGVELSTV
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgacgaccactaccttcatgcctccaaccagatttttgccaacatgatcaac
gactcgccctgggagttgtcccagtttgcaacaatgcctcatacgacatctctgcagtca
gtggatggaccgttcctgcagattgtggagcagcccaaacagcgcggcttcaggttcagg
tacggctgtgaaggtccatctcacggcgggctgccgggagcctccagtgagaagaacagg
aagacctacccaaccgtgaagatctgtaactaccagggtcaggctcgagtcgtggtccaa
ctggtgacagcgttgaccccgctgcctcagctgcatgctcacagtctggtggggaagcag
tgtgagaaaggcatctgcatcgctgacctgcagtccaaagactccaccatcagttttccc
aacttgggcattctccatgtgacgaagaagaacgtggcgaagactctggaggagaggatg
gtcgaggcctttaggatgggatacaactgtggagtctccatccaccctgacatcgacatc
ctgcagggagaggtccgagtcccacgggaacttaacgaccaccagcgcaccgtgatcagc
agcgcagcagccaaccaggccaaagagatggacctcagtgtggtccgcctcatattcacg
gcgttcctccctgacagtgatggaggtttctcccgacgactcgagccagtggtgtctgag
cccatctacgacagcaaggctccaaatgcctccaacctgaagattgtaaggatggatcgg
accgccggatgtgtgacgggaggagaggaggtctacctgctctgtgacaaagttcagaaa
gatgatatccaggtgcggttctatgaggaagatgactcggggttgatctgggaggctctg
ggagatttctcccccacagatgtccacagacagttcgccatcgtcttcaagaccccaaag
tatcgagaccagaatctgcagaagccgacgtctgtctttgtccagttaaagaggaagtct
gacaacgagaccagcgagcccaaacccttcacctaccatccccaggttatagataaggag
gaggtgcagaggaagaggcagaagactttgccgaattttcaggacttcagtggaggaggt
ggaggactgtatcgaggaggaggtcctactgccggaggaggaggacctggctcagcagga
ggaggaggatactatcagggtttcacctcctacaactacggaggaggaggaggaggagga
ggaggtggaggtggaggaggcttctccacggcatactcagctggtcttggaggaggcggc
atgaagcacgctttgcggagtgatgctgcagacgacagcgatccagatgatgacccaacg
tcgggggctgtggtgcgaggttccacccagcctggaggacgagaggaggaggagaggagt
aaggagggcgggaccagtgtggagccaggagcagacgatctgctgatggaggcgacccgc
atgcagcttgatgctctcttccggtactccatcactggcgattcagcatacctgctggct
ccacagcgccccctcatgatggctcagaacgaggatggagacactggccttcatctagca
gttctgcacagccagcaggaggcgctgatgagtctgacacaggtggtgtctgcactggct
ggagaggaggtgctcaacatgaggaaccacctgtaccagactcccctgcacctggcggtc
atcactcagcagaaggaggcagcagaagtgctgctgctggccggcgctgacccgactcta
accgattgtcgtggtaacacggttcttcacctggcggcgcagcaggaaggaggtgggatg
gtggagcttttactgcgacgcagagagctgaggaagctgctgcagtgcagcaacacagca
ggtctgtgtgccatacacctggcagttctggccgataggctgcaggctctcagggagctg
ctggcaggtggggccgacgtggaggctcaggagcgtagctgtggacggaccgccctccac
ctcgccacggagaccaacaacgtgtcgctggccggctgcctgctgttggagggaaacgct
aaggtggactgctgcaccttcaacggctccgcccctctccacattgctgcagggcgaggc
tcggtcaagctcacagctctcctcatggctgcaggtgccgaccctcagagggagaacttt
gagccactcttcttcagggaggaggaggaggaggactgtgagggtgacgacgatgaaggc
tacatcccaggaacaactccagtcaacatggctacctcgtctgaggttctggatcttctc
aacggtcacgagtacaaaccaaaaacccagcaagccttcgtccctcctgagggcgacctg
tcgggcctggacgctcaggtgaagcaagctgtgtgcagagctctggagactggaggatgc
tgggagaacctggctcacagcctcggcctcggcatcctgaacacggccttccgactgagc
ccatctccagccaaaactctgctggacagctatgaggtttctggtggaaccatctcggat
ctgctgactgctctcaggtctgctggggaatgcaaggcactgagcatcctgaaggaggca
ctgtgtcagaaccaggggaggagcggtgacccagcagctgaagatctgtgcccccaggtt
cagaacctcaaggtggatgctcagattgacagcggggtgtgcgacagtggggtggagctc
tccacagtgtaa
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