Glycine max (soybean): 100778777
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Entry
100778777 CDS
T01710
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03020
RNA polymerase
gmx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100778777
09124 Replication and repair
03420 Nucleotide excision repair
100778777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100778777
03400 DNA repair and recombination proteins [BR:
gmx03400
]
100778777
Enzymes [BR:
gmx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100778777
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100778777
DNA repair and recombination proteins [BR:
gmx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100778777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF5938
Motif
Other DBs
NCBI-GeneID:
100778777
NCBI-ProteinID:
XP_040861151
LinkDB
All DBs
Position
9:complement(49804083..49813060)
Genome browser
AA seq
1790 aa
AA seq
DB search
MDVRFPFSPAEVAKVATVQFGIISPDEIVIISFRQMSVVQIEHGETTERGKPKIGGLSDP
RLGTIDRKLKCDTCTGSMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILAN
EDDHKFKLALRIRNPKNRLRKILDACKNKSKCEGGDDIDIHGKDTGEPVKKSRGGCGAQQ
PKITIEGMKINAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLKRISDEDCQLLGLN
PQYARPDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQEKNGSP
AHIISEFVQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV
DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA
KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI
MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSLETRAEVLELMMVPKCIVSPQSNKPVMG
IVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPTILKPEPLWTGKQVFNLII
PKQINLIRFSSWHSDDERGPITPGDTMVRIEKGELLTGTLCKKTLGASAGSLIHVIWEEV
GPDAARKFLGHTQWLVNYWLLQNAFSMGIGDTIADASTMEAINQTISLAKEKVKQLIRDA
QEKKLEAEPGRTMMDSFENRVNQTLNKARDDAGNSAGNSLSESNNLKAMVTAGSKGSNIN
ISQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDHGPESRGFVENSYLRGLTPQEFFFHA
MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMLKYDGTVRNSLGDVIQFLYGEDGMDAIW
IETQKLDTLKMKKTEFDRVFRYEFDEENWKPNYMLQEPVEDLKTIREFRNVFEAEVQKLE
ADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQER
LKVVPGEDALSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGEIESRFLQS
LVVPGEMIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELINVAKSIKTPSL
SVYLKPDAGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVMSYYEM
PDEEVALEKISPWLLRVELNREMMVDKKLSMADIAQKINLEFDDDLSCIFNDDNAEKLIL
RIRIMNDDAPKGEVQDESAEDDVFLKKIETNMLTEMTLRGIPDINKVFIKNAKVQKFDEN
EGFKSNGEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRIV
ISFDGSYVNYRHLAILCETMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAAY
AETDSLRGVTENIILGQLAPIGTGQCALYLNDGMLKNAIELQLPSYTDGLDFGIMSGATP
YHEGTMMSPSYLLSPNLRLSPSSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPA
YSPTSPSYSPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPT
SPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTSPSYSPSSPTYS
PSSPYNSGVSPDYSPTSPQFSPSAGYSPSQPGYSPSSTSQDTPQTSDKDE
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atggatgttcgattccctttctccccagctgaggtcgccaaagttgccacggttcagttt
ggaattatcagtcccgacgagatcgtaattatctcttttaggcaaatgtctgtggtgcaa
atcgagcacggtgagacaaccgagagagggaagccgaagatcggaggattgagcgaccct
cggctcggaactattgacagaaagctcaagtgtgacacttgtacgggcagtatggctgag
tgccctggccattttggccacttggagcttgccaagccaatgttccatattgggtttttg
aagactgtattagctataatgcgttgtgtttgcttcaactgctccaaaattctagctaat
gaggatgatcacaagttcaagctagctttaagaatcaggaatcccaaaaataggctgaga
aagattctggatgcctgcaaaaacaaaagcaagtgcgaagggggagatgatattgacatt
catggtaaagataccggggagccggttaaaaagagtcgcggtggctgcggtgctcagcag
ccgaagattactattgaggggatgaaaataaatgcagagtataaagctcagaggaagaaa
agtgatgaccaagaacagcttcccgaacccgtggaaaggaaacagactctttctgcagaa
agggttcttagtgttctgaaaaggataagcgacgaggactgtcagttgttgggcttgaat
cctcagtacgctcgtcctgactggatgattttacaagttcttccaattcctcctcaacct
gttaggccttctgtaatgatggacacatcctccaggagtgaggatgatttaactcaccaa
ctggccatgatcatcaggcacaatgagaatctgaagagacaggagaagaatggatctcct
gcacatattatttccgagtttgtgcagttattgcagttccacgtagcaacatattttgat
aatgagttacctggattgccaagggctactcagagatctggaaggccaatcaaatcaata
tgtagcaggctcaaggcaaaagaaggccggattagaggtaacttgatgggtaaaagagtt
gatttttctgctcgaacagtcattacacctgatccaactatcaacattgatcaattggga
gtaccatggagtattgcgttgaatctaacataccctgagactgtgactccatataacatt
gaaaggttgaaggaacttgttgagtatggaccccatcctccacctggaaaaactggtgcc
aagtatatcattcgtgatgacggacaaagacttgatctcagatatttaaagaaaagcagt
gatcaccatttggagcttggctacaaggtcgagcgtcatttgaatgatggagactttgtt
ctcttcaatcgtcagcctagtcttcataaaatgtctatcatgggacacagaatcaaaatc
atgccttattctactttccggcttaacttgtccgtaacttcaccatataatgctgatttt
gacggggacgaaatgaatatgcatgttcctcagagtttagaaaccagagctgaggtgtta
gagctgatgatggtgcctaaatgcattgtgtcaccacagtcaaacaagccagtgatggga
attgtccaagatacacttctaggatgcaggaaaatcaccaagagagacactttcatcaca
aaggatgtttttatgaacatattgatgtggtgggaagattttgatgggaaagttcctgct
cctacaatattgaagccagaaccattgtggacagggaaacaagttttcaatctcatcatt
cctaaacaaataaatctaattagattttcgagctggcatagtgatgatgaacggggaccc
ataacccctggggataccatggttagaattgaaaaaggggaactacttaccggaacactt
tgcaaaaagactcttggagcatccgccggaagtctcattcatgtgatttgggaagaggtt
ggccctgatgcagctcggaaatttcttggtcatactcagtggcttgtaaactactggctt
ttgcagaatgcttttagcatgggaattggtgatacaatagctgatgcttccactatggaa
gccataaatcagactatttcattagctaaggagaaagtgaaacaacttatcagggatgct
caagagaagaagttggaggccgaacctggtcggacaatgatggattcatttgaaaataga
gtgaaccagactctaaataaagctcgtgatgatgctggaaacagtgctggaaatagttta
tctgagagcaacaatctgaaagcaatggtgacagctggttcgaaaggaagtaacatcaac
atatctcaaatgactgcttgtgtggggcaacagaacgttgaggggaagcgaattccatac
ggattcgtagaccggacattgcctcacttcacaaaagatgatcatgggcctgaaagtcgt
ggctttgtggagaactcatatctacgtggactgacccctcaagagttctttttccatgcc
atgggtggtagggaaggtcttattgatactgccgtgaagacctccgaaaccgggtacatt
cagaggcgactcgtgaaggctatggaggacatcatgcttaaatatgatgggacagttaga
aactctttgggagacgtcatacaatttctctacggagaagatggtatggacgctatttgg
attgaaacacagaagctggatacccttaaaatgaagaaaacagaatttgatagggtgttt
aggtatgaatttgacgaggaaaactggaagcctaattacatgcttcaagagcctgtagaa
gacttgaaaaccatcagagagtttcgtaatgtgtttgaggcagaagttcaaaagcttgaa
gctgatagacatcaactcgcaatagagatagcctctaatggtgacaattctctgccactg
cctgttaacctcaagaggcttatctggaatgctcagaagacatttaaggttgacttccga
aggccttctgatatgcatccaatggaaattgtggaagccatcgataagctccaggagcgg
cttaaggttgttcccggcgaggacgccttgagtcaagaagctcaaaagaatgctactctc
ctcttcaatattctgctccgcagcactttcgccagtaaaagggtcttggaggaatacagg
ctttctcgcgagtcatttgagtgggtagtcggagaaatagaatcaaggttcttgcagtcg
cttgtggtccccggagaaatgattggtgtcgtggctgcacaatcaattggtgaacctgct
actcagatgactctcaacactttccactttgccggtgtcagcgcaaagaacgttactctt
ggtgttcctaggttaagggaactcattaatgtcgccaagagtattaaaacgccttctctc
tctgtgtacttgaaacctgatgctggtaagactaaagagagagccaagactgtgcagtgt
gctttagaatataccactctcaggagtgtcactcaagctacagaggtgtggtatgatcca
gacccgatgagtacaataattgaagaggatgtggattttgtcatgtcctactatgaaatg
cccgatgaagaagttgctcttgaaaaaatctcaccttggttgcttcgcgtggagctgaat
cgtgaaatgatggtggataagaagttgagtatggctgacattgcacagaagattaacctt
gaatttgatgatgatttgagttgtatatttaacgatgacaatgctgaaaaacttatactt
cgtatccgtataatgaatgatgatgcaccaaagggtgaggttcaggatgaatccgctgaa
gatgatgttttcttgaagaaaatagaaaccaacatgctgactgaaatgactctacgagga
atcccagacataaacaaggtttttataaaaaatgcgaaagttcagaagtttgatgagaac
gaaggttttaagtctaatggggaatggatgcttgataccgaaggtgtgaacctgctagct
gtgatgtgccatgaagatgttgacgcgacaaggacaacaagcaaccacttgattgaggtt
attgaagttcttggtattgaggcagttaggcgatctctactggatgaattgagaattgta
atttcgtttgacggttcttatgtaaattacaggcatttggctattctatgtgaaacaatg
acgtatagggggcatttaatggcaataacacgtcacggcatcaacaggaatgatacaggg
ccaatgatgagatgctcatttgaagagacagttgatattctgcttgatgctgcagcatat
gcagagactgatagcttgaggggagtcacagaaaacataatcttagggcagctcgccccc
attgggacaggccaatgtgccttgtatcttaatgatggcatgctgaagaatgccattgag
ctacaactgcctagttatacagatggtcttgatttcggtatcatgtctggagcaactcca
tatcatgaaggcaccatgatgtctcccagttatctgttgagccccaatttacgcctgtct
cctagttcggatgcacagttttcgccttatgttggcggcatggcgttttctccttcttca
tctcctggttatagtccatcatcccccggctatagtccatcttcgcccgggtacagcccc
acgtcgcccggttacagtcccacttcccccggttacagtcccacctctccaacttatagc
cctagctctcccggatatagtccaacaagtccagcttattcgcctacatctcccagctac
agccccacctcacctgcatacagcccaacttctcctgcatacagctccacttcacctgca
tacagtcctacttctccatcatacagccccacttcacctgcatatagtcctacttctcca
tcatatagcctgacatctccttcctacagtccaacttcaccctcttacagccccacgtct
ccctcatatagtcctacctctcctgcatacagccccacatctccctcatatagcccaaca
tctccatcttatagtcctacttcccccagttacaatccacaatcagcaaaatatagtcct
tcgttagcttattctccaagcagtccaagattgtctcccacatctccaaactatagcccg
acgtctccctcgtattcaccaacatctccttcttattctccatcaagcccaacatacagt
cccagcagtccatataattctggtgtgagcccggactatagcccaacttccccccaattt
agtcccagtgcgggttactcaccaagtcaacccggttactcaccgtcgtcaaccagccag
gacactccacaaactagtgacaaggatgaatga
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integrated database retrieval system
