KEGG   Glycine max (soybean): 100810483
Entry
100810483         CDS       T01710                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
gmx  Glycine max (soybean)
Pathway
gmx03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gmx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100810483
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gmx03021]
    100810483
Enzymes [BR:gmx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100810483
Transcription machinery [BR:gmx03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     100810483
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7
Other DBs
NCBI-GeneID: 100810483
NCBI-ProteinID: XP_006573755
UniProt: I1JA29
LinkDB
Position
1:complement(55722982..55737027)
AA seq 1457 aa
MDDDLLQRNKTPSVVIKAIKFDVLTEEDIENISVLEINAAGQVTGSNLGLPNASDECATC
GTKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKSIRHKSKGARLIYGTKRS
NDCNYCSVYPSMQFRVSSNDLFRRTAIIVEVKASKKTLGTEIPADFWNFIPCDAQQEENY
VNRRVLSPVQVNYLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSGSRL
SFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENAFNS
SGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNREKLLY
CCELHLLEKGKINVCRKGSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMIS
LTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVTARIELNELVALDRQLINGQS
GRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWN
GKQLFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLN
FLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLD
YYCDFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKG
NSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSS
GTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRD
LYDAYDGTVRNLYGNQLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSAL
GQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLER
LLFSNIVSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQ
RKDSKVCFTNLKISSRKCSADSMVKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDSVRD
LVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVL
LKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLV
ANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLD
GLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASFDKPNNKIGTHLHKYSSDKC
GSEFRHKNGYALKEGKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLSESDRSTML
RVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCILGALDIVD
PKKSKIQEKKWSGHGDT
NT seq 4374 nt   +upstreamnt  +downstreamnt
atggatgatgaccttttacagaggaacaaaacaccatctgttgtcataaaagcgataaag
ttcgatgtcttaactgaagaagatatagagaatatctctgttttggagataaatgcagcc
gggcaggtcactgggtcaaatttgggattgccaaatgcatctgatgagtgtgccacatgt
ggcactaaagacaaaaagttctgtgaaggtcattttggagtaatcaaatttcctactccc
atactccatccatattttatgttagaaattgcgcacatcttgaacaagatttgccctgtt
tgtaaatctattcgtcacaaatccaagggtgctcgattaatctatggaaccaagcggtct
aatgattgcaattattgttctgtgtatccatcaatgcaatttagagtttcctccaacgat
ctctttagaagaactgcaattattgttgaagtaaaggcttcaaagaaaactttgggaaca
gaaatacctgctgatttttggaattttattccttgtgatgctcaacaagaagaaaattat
gtaaatagaagggttttatcacctgtgcaggttaattatttgttgaatgatgttgatcca
gactttattgaaaaatatattccaagaaagaatttgctgtgtcttaattgcttcccggtg
actccaaattgtcatcgtgtgacagaagtcccttatgcaatttctagtggaagccggttg
agttttgatgacaggactcgatcttgtaagaaattggttgatttcaggggtacagctaat
gaattaagttctcgtgttttggattgcctgaggatctctaagctaaatcctgataaaacc
ccaaatagtatttttgctgatatccagcaaagaaagattggagaaaatgctttcaattct
tctggtttaagatggataaaagatgtggttcttggaaaacgcaatgacagttcattccgt
actgtggttgttggtgatccagaccttgagcttagtgaaattggtataccttgtcatatt
gctgaaagtttgcaggtttctgagtatgtgaataggcagaatagggagaagctgctttat
tgttgtgagctacacttgttagagaaggggaaaataaatgtctgcagaaagggtagtata
gttcatctgtataaaaaggaagatctacaaataggtgacaaattttataggcctcttgct
gatggggataaagtgctgataaataggcccccttctatacatcaacattctatgatttct
ctcacagttagggtccttccaatatcttctgtagtgtgtattaacccactctgttgttcc
ccactacgtggggattttgatggtgattgccttcacgggtatattccacaatcggttact
gcaagaattgagcttaatgagctggttgctttagataggcaattgattaatgggcaaagt
ggtagaaatcttctttcactttcccaagatagtttgactgctgcatatttgctaatggaa
gatggggtccttttgaatgtttatcaaatgcagcagcttcaaatgctttctatttctaac
aaaagattaatacctcctgcagttgttaaagctccctctagtaatagctcactttggaat
gggaagcaattattcagcatgcttttgccgtatgattttgactattcttttccttcagat
ggtgttgttgttagtgatggagagcttgtatcttcttctgaggcttctggttggttacgc
gattctgactacaatgtttttcagagtcttgtggaacattatcaagggaagactctaaac
tttttgtatgcagcacaaaaagttctgtgtgagtggctgtctatgacaggttttagtgtt
tcactctctgatttgtacctttcttctgattcgtatgcacgggaaaacatgatagaggaa
atcttttatggcttacaagatgcagagcgggcttgtaatttcaagcagctattgttggat
tattattgtgattttctgtcaggaagtcttcaagagagtgaaaatgctatcactgttaat
gcagatcgtctgaattatgaaagacaaatatctgcttctctcagtcaagcgtcagttgat
gcttttaggcaagtttttcgcaatattcaaagtttagctgataaatatgcatgcaaggga
aattctttccttgcaatgtttaaggctggaagcaagggtaatttgctgaaattagttcaa
cattccatgtgccttggcatgcaaaattctctggtccgcttgtcatacagactaccccgt
catctttcatgtgctgactggaatagtcaaaagtgggttgattcaatccagatgtcttct
ggtacccttgaatctgttcagtcatacattccatatgctgtagttgaaagttctttttta
actgggttgaatccacttgaatgttttgttcattcagtgacaaatcgtgatagctctttc
agtgaccatgcggaccttcctggtacactgacacgtagacttatgttcttcatgcgtgat
ttgtatgatgcatatgatggaacggtgagaaatttatatggtaatcaacttattcagttt
tcttatgatattgaagaggactcttcatgcaataaaggtttccagcagtatgctttaggt
ggtgaatcagttggggctatttctgcctgtgcaatttctgaagctgcatacagtgctttg
ggtcaaccagttagtctactcgaaacatcacctttgctgaatttgaaaaatgttctggag
tgtggttcaaggaaaagaaatggtgatcagactgtgtctttatttttgtctgaaaagctt
ggtaaacagagacatgggtttgaatatgcagctttagaagtcaagaattatttggaaaga
ttgttgttctcaaacattgtttctaaagtgatgataatattcaccccacatgacagcagg
agccaagaaaaatacagtccttgggtctgccactttcatttagacaaggaaattgtaaca
agaagaaaattgaaagtgcattctatcattgactctctctatcagagatattactctcag
agaaaagactcaaaagtctgttttaccaatttgaaaatttcaagcaggaagtgttctgct
gattccatggttaaggaaggtgaagacacttctatagataaagaagagggtgatgattgc
atcatggtcacaattgttgaaaactctaagaatcctatacaactggattctgttcgggac
ttggtgataccttttcttctaggaacagcaatacaaggatttctggatgtcaagaaggtt
gatattctctggaataatcagtcaaaagtaacaaattctcgtaatggtttttctggtgaa
ctgtacttgagggtaactttgtccagcgagggtagcagaggaagattttggggtgtcctc
ctaaagctttgtcacaagataatgcatataattgactggacacgaagtcatacagataac
atcaatcatttctcatcagcatatggaattgatgcagggtggcaatactttttcaatagt
ttggcatgtgcaacatctgataccggcaagtccatccttcctaagcatttgtgtcttgtt
gccaatagtctgtcatgtagtggagagtttgtaggattaaatgctaaaggcatggcacta
caaagaaaacatgcgtccgtttcatcaccatttgtgcaagcatgctttgcgaatccaggt
agttgctttataaaagctgctaagtctggagccacggataatctccagggcagcctggat
gggttggcttggggaaactgtctatctatggggacaagtggaatgtttgatgtcatatat
tcagagaagggacatcaggtagctaagtctgtagatgtgtatgagctgctagaagccagt
tttgacaagccgaacaataaaattggtactcatttgcacaaatattcatctgacaaatgc
ggttctgagtttaggcataaaaatggttatgccttgaaagagggaaaacagtggaaaacc
attttaagaaattttgtgacagtaaatgatattcagaagctgacttttgcatcgaggtgc
atattgaacaagtattcaattgatgagctgctaagtgagagtgacaggtcaacaatgcta
agggttttgaattttcatcctcataaaagtgagaagtttggcattggaccacaggacatt
aaggttggatggcatccaaaatacaaggatagccggtgcttccatataataagaactgat
gggacggttgaagatttttcataccgcaaatgcattcttggtgctcttgatatcgttgat
ccaaaaaaatcaaagatccaggagaaaaaatggtcaggacatggtgacacgtaa

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