Gordonia sp. 135: GKZ92_12605
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Entry
GKZ92_12605 CDS
T06305
Symbol
pdxS
Name
(GenBank) pyridoxal 5'-phosphate synthase lyase subunit PdxS
KO
K06215
pyridoxal 5'-phosphate synthase pdxS subunit [EC:
4.3.3.6
]
Organism
god
Gordonia sp. 135
Pathway
god00750
Vitamin B6 metabolism
god01100
Metabolic pathways
god01240
Biosynthesis of cofactors
Module
god_M00916
Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:
god00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00750 Vitamin B6 metabolism
GKZ92_12605 (pdxS)
Enzymes [BR:
god01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.3 Amine-lyases
4.3.3.6 pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
GKZ92_12605 (pdxS)
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Gene cluster
GFIT
Motif
Pfam:
SOR_SNZ
ThiG
Dus
His_biosynth
NanE
NMO
IGPS
Glu_synthase
DHO_dh
FMN_dh
Motif
Other DBs
NCBI-ProteinID:
QGP88406
UniProt:
A0A6I5ZF94
LinkDB
All DBs
Position
complement(2809778..2810689)
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AA seq
303 aa
AA seq
DB search
MSHNGATVPEVGQGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPAD
IRAQGGVSRMSDPDMIDGIISAVSIPVMAKARIGHFVEAQILQSLGVDYVDESEVLTPAD
YSNHIDKWAFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNATTHMRKIRDEI
RRLTSLPKDELYVAAKELQAPYDLVVEVAEAGKLPVTLFTAGGIATPADAAMMMQLGAEG
VFVGSGIFKSGNPAQRAAAIVQATTFHDDPDVLAKVSRGLGAAMVGINVDDIPQPHRLAE
RGW
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcacaacggcgcgaccgttcccgaggtcggacagggcactgcccgtgtcaagcgg
ggaatggccgagatgctcaagggcggcgtgatcatggacgtggtcacccccgagcaggcg
aagatcgccgaggacgccggcgcggtggccgtgatggctctcgagcgcgtgcccgccgac
atccgcgcccagggcggcgtctcgcggatgagcgatccggacatgatcgacggcatcatc
tccgcggtgtccatccccgtgatggccaaggcgcgtatcgggcacttcgtcgaggcgcag
atcctgcagagcctgggcgtggactacgtcgacgagtccgaggtgctgaccccggccgac
tactccaaccacatcgacaagtgggcgttcaccgtgccgttcgtctgcggtgcgaccaac
ctgggtgaggcgctgcgtcggatcaccgagggtgcggcgatgatccgctccaagggcgag
gccggcaccggtgacgtgtccaacgccaccacccacatgcgcaagatccgcgacgagatc
cgtcgcctgacgtcgctgccgaaggatgagttgtacgtcgcggcaaaggaactgcaggct
ccctacgacctggtggtcgaggtcgccgaggccggcaagctgccggtgacgctgttcacc
gccggcggtatcgccaccccggccgacgccgcgatgatgatgcagctcggcgccgagggc
gtcttcgtgggctcggggatcttcaagtccggcaacccggctcagcgtgcggccgcgatc
gtgcaggccaccaccttccacgacgaccccgacgtgctggccaaggtctcgcgcggcctg
ggcgcggcgatggtcggcatcaacgtcgacgacatcccgcagccgcaccgcctggccgag
cgcggctggtga
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