Geomonas paludis: M1B72_20010
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Entry
M1B72_20010 CDS
T08160
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gpl
Geomonas paludis
Pathway
gpl03030
DNA replication
gpl03410
Base excision repair
gpl03420
Nucleotide excision repair
gpl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M1B72_20010 (polA)
03410 Base excision repair
M1B72_20010 (polA)
03420 Nucleotide excision repair
M1B72_20010 (polA)
03440 Homologous recombination
M1B72_20010 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpl03032
]
M1B72_20010 (polA)
03400 DNA repair and recombination proteins [BR:
gpl03400
]
M1B72_20010 (polA)
Enzymes [BR:
gpl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M1B72_20010 (polA)
DNA replication proteins [BR:
gpl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M1B72_20010 (polA)
DNA repair and recombination proteins [BR:
gpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
M1B72_20010 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M1B72_20010 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_2
ATP1G1_PLM_MAT8
HHH_5
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
UPU35698
LinkDB
All DBs
Position
complement(4679057..4681735)
Genome browser
AA seq
892 aa
AA seq
DB search
MTAERETLYLLDGSSYIYRAYFAIRHLSSPNGFPTNALYGFTQMLLKVMKDRAPAHVAVV
FDAGKITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFNIPALELPGWEADDIIGTI
AKKAEAAGLDCVVVTGDKDLMQIVTEHVTLLDTMKDKSFGIPDVIEKFGVEPARVVDVLA
LWGDTSDNIPGVPGVGEVTAKKLMQEFGTLDELLARASEVKGKTGERLVEFADQARLCRT
LATIDCAVPIDYNIDDFAVTPPDNRRLAALFREYGFATLLKDLTSSPTLSCDRYSLVLTE
AELRELVAKLEKAPAFAIDLETTSLNPFEAAVVGYAVSCHSHEAYYIPVGHRYLGAPEQL
SEKLVLELLGPLLADPNRKKIGQNLKYDYQVLQLAGVAFAGIWCDTMLAAYLVNPSRNSQ
GLDALALEYLDHRMISYAEVAGTGKCELNFSEVDLDRAGPYSCEDADATFLLHEILLPKV
REQGMEELLFDIEMPLMEILADMELCGVKLDLELMKELSAGFGKQLIELEAKIHDHCGGP
FNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEQHEVARLLLQYRSISKL
KSTYTDALPKLVDPRTGRVHTSYNQAVTNTGRLSSSDPNLQNIPVRGAEGRDIRRAFVAE
PGSLILSADYSQIELRVLAHLSGDRVLSEAFASGEDVHRRTAAEVFGMFPELVTPEMRRQ
AKVINFGVIYGQGAFSLAKELGVTAKQAKAFIDSYFERHAGARSFLDSCISEAETCGFVT
TILGRRLQIPEIASKNGNIRAFAQRNATNYPIQGSAADIIKAAMIKVCRRMREERVASRL
IMQVHDELVFEVPENERELMEELVRSEMEGALPLSVPLKVDLNFGQNWAEAH
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
gtgacggccgaaagagaaacactgtacctgctggacggctcttcctatatctaccgcgcc
tatttcgccatccgccacttgagctcccccaacggttttcccaccaacgcgctctacggc
ttcacccagatgctcttgaaggtcatgaaggaccgggcgccggcgcacgtggccgtggtg
ttcgacgccggcaagatcaccttccgaaacgagctcttccccgcctacaaggcgacccgg
agcgccatgccagaggatctggcccagcagatcgagccgatcaagcagatggtgcgcgcc
ttcaacatcccggcgctggagctgcccggctgggaggcggacgacatcatcgggaccatc
gccaagaaggcggaagcggcgggtctcgactgcgtggtggtcaccggcgacaaggacctg
atgcagatcgtcaccgagcacgtgacgcttctggacaccatgaaggacaagagcttcggc
ataccggacgtgatcgagaagttcggggtggaaccggcgcgggtggtcgacgtgctggcg
ctttggggggatacctccgacaacatcccgggggtcccgggcgtcggggaggtcaccgcg
aagaagctcatgcaggagttcggcacgctggacgaactgctggcgcgggcctccgaggtg
aaggggaagaccggggagcggctggtggagttcgccgaccaggcccgcctgtgccgcacc
ctggccaccatcgactgcgccgtccccatcgactacaacatcgacgacttcgcggtcacc
cctcccgacaaccgccggctggccgcgctgttccgcgagtacggtttcgccacgctcttg
aaggatctgaccagttcgcccaccctttcctgcgaccgctactcgctggtgctgaccgag
gccgaactgcgcgaactggtggcgaagctggaaaaggcgcccgccttcgccatcgacctg
gagaccaccagcctgaacccgttcgaggccgccgtggtcggctacgcggtgagctgccac
tcccacgaggcctactacatcccggtcgggcaccgctacctgggcgccccggaacagctt
tctgaaaaactggtgctggagcttctgggaccgctccttgccgacccgaaccgcaagaag
atcggccagaacctgaagtacgactaccaggtgctgcagctggccggcgtcgcattcgcc
ggcatctggtgcgacaccatgctggccgcctacctggtcaacccgtcgcgcaacagccag
gggctggacgccctggcgctggagtacctggaccaccgcatgatctcgtacgcggaggtg
gccggcaccggcaagtgcgaactgaacttctccgaggtggacctggaccgcgccggcccg
tactcctgcgaggacgccgacgccaccttcctgctgcacgagatcctgctcccgaaggtg
cgtgagcaggggatggaggagctcctcttcgacatcgagatgccgctcatggagatcctg
gcggacatggagctgtgcggtgtgaagctggacctggagctcatgaaggagctgtccgcc
gggttcggcaaacagctcatcgagctggaggcgaagatccacgaccactgcggcggcccc
ttcaatatcaactcccccaagcagctgggtgagatgctcttcgagcgcatggggctcgcg
gtcggcaaaaagaccaaaggaaagaccggctggtccaccaacgtcgaggaactggagcgg
ctggccgagcagcacgaggtggcccggctgctcttgcagtaccgcagcatctccaagctg
aaatcgacctacaccgatgcgctgccgaagctcgtggacccgaggaccgggcgcgtgcac
acctcctacaaccaggcggtcaccaacaccggcaggctctcctcgtccgacccgaacctg
cagaacatcccggtgcgcggggcggaggggcgcgacatcaggcgcgccttcgtggccgag
cccgggagcctgatcctttccgcggactactcgcagatcgagttgcgggtgctggcgcac
ctctccggggaccgggtgctcagcgaggccttcgcctccggtgaggacgtgcaccgccgc
acggcggccgaggtgttcggcatgttcccggaactggtcacccccgagatgcggcgccag
gccaaggtgatcaacttcggcgtcatctacggccagggggccttctcgttggccaaggag
ctcggggtcaccgccaagcaggccaaggccttcatcgacagctacttcgagcgccatgcc
ggcgccaggagcttcctggacagctgcatctccgaggccgagacctgcggcttcgtcacc
accatcctggggagaaggctgcagatcccggagatcgccagcaagaacggcaacatacgg
gccttcgcccagagaaacgccaccaattacccgatccagggctccgcggccgacatcatc
aaggcggccatgatcaaggtctgccgccgcatgcgcgaggagcgggtggccagccgcctg
atcatgcaggtgcacgacgaactggtgttcgaggtgccggaaaacgagcgggagctcatg
gaggaactggtgcgcagcgagatggagggggcgctgccgctgtcggtgccgctcaaggtc
gacctcaacttcggtcaaaactgggccgaggcgcactaa
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