Gossypium raimondii: 105777533
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Entry
105777533 CDS
T04129
Name
(RefSeq) LOW QUALITY PROTEIN: polygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Module
gra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105777533
Enzymes [BR:
gra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
105777533
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Motif
Other DBs
NCBI-GeneID:
105777533
NCBI-ProteinID:
XP_012456319
UniProt:
A0A0D2R180
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Position
2:complement(14165529..14167136)
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AA seq
410 aa
AA seq
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MAIQFNCVSSMLILVLLSISSVEGQGGGGGGVIDVVAKFGAKADGKTDLSKPLLDAWKEA
CASTSPAKIVIPKGIYFLSTATLDGPCKAPIELQVEEPXRLRKPVAFKEPKWITFNRIEN
FKLSGGGLFDGQGTTAYKREGCKNHDYCGSLPINLRFDFLTNAMIQDITTKDSKQFHVNV
LGCKNITFEHFTISAPDESPNTDGIHIGRSDGVNVLNSEIKTGDDCVSIGDGXQNLVING
VTRGPXHGIDISALGLFKNEEPVDGVTVKNCSFTNTSNGVRIKTWPGAERGTCSNIHFED
ITVTNVSSPIIIDQKYCPWNKCKINEESKVKLSNISFKNIHGIRTSEAVKIICSATLPCE
NVELADIEITHSGPTGPAVSQCSNVKPKVSGKQNPAPCSAPLPAKPTPTA
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggctatccaatttaattgtgtttcatccatgttaatactagtacttttatccatatca
tccgttgaaggtcaaggaggaggaggtggtggtgttattgatgttgttgcaaagtttggt
gcaaaggcagacgggaaaacagatttgagtaagccattgttggatgcttggaaagaagca
tgtgcctcgacatcgccagcaaaaattgtgattcctaaagggatatattttttaagtaca
gctaccttagatggtccttgcaaggctcctattgagcttcaagttgaagaaccttgaagg
ctccgcaaacctgttgctttcaaggagcctaaatggattaccttcaatagaattgaaaat
ttcaaattgtctggcggaggacttttcgatggccagggaaccactgcttataaaagggaa
ggctgcaaaaaccatgattattgtggttcacttcctattaacctaaggtttgatttttta
accaacgcaatgatacaagatataactaccaaagacagcaagcagttccacgttaatgtt
ctaggatgcaaaaacattactttcgaacatttcaccatatctgcacctgatgaaagccca
aacacagatggtattcacatcgggagatcagatggggtcaatgttcttaactcggagata
aaaactggtgatgattgtgtttcaattggggatggtntccaaaatttggttatcaatgga
gtaacacgtggaccgtgacatggtatcgatattagcgccctcggattgtttaaaaatgaa
gaacccgttgatggagttacagtaaaaaactgctccttcactaacacttccaatggtgtt
agaatcaaaacttggccaggtgctgaacgcggcacctgttctaacattcactttgaggat
attaccgtcaccaatgtcagttctcctattataattgatcagaaatattgcccgtggaac
aaatgcaaaatcaatgaagaatcaaaagttaaactaagcaacattagtttcaaaaacatt
cacggcattcgcacttccgaagccgtgaagattatttgcagcgctactttgccgtgtgaa
aatgtggaacttgccgacattgaaattacgcacagtggaccgactggacctgcagtatca
caatgttcaaatgtgaagcctaaagttagtggcaaacaaaatccagctccatgttccgcc
cctctcccagcaaaacctaccccgaccgcttaa
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