Gossypium raimondii: 105794794
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Entry
105794794 CDS
T04129
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
gra
Gossypium raimondii
Pathway
gra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105794794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gra03400
]
105794794
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105794794
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
NPBW
YL1
Motif
Other DBs
NCBI-GeneID:
105794794
NCBI-ProteinID:
XP_012479571
UniProt:
A0A0D2QQH3
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Position
7:33842070..33850732
Genome browser
AA seq
1315 aa
AA seq
DB search
MAPSRRQSNGRSPLVNQQSQITSFFSKKNSSSPSPSPPPPLAKHTSKLNPIPGPKPNPSR
SPIPTTPSPGEPKLKKPLLVIGQSPAPTPSSPLNITFGDEVVDKRLRVYWPLDKAWYEGV
VKSFDKVSGKHLIQYDDSEEEELDLGKEKIEWVEETTGRFKRLRRGGSLGFKKVVIDDED
DDVADSANEKSDDDDSSDEDWGKNAEKEVSEDADEEDMDLEDEKEEEEELEEEEVGMKIS
KRKGGGKTESKKRKANGVAKPESGKKSKTSANVSTKEEFKVPSVEPVKKIETDKASTADK
ALVVDELERFGKREAEKLHFLGLEVRRDANRKRPGDANYNPKTLYLPPGFLKSLSGCQRQ
WWEFKSKHMDKVLFFKMGKFYELFEMDAHIGAKELNLQYMKGEQPHCGFPEKNFSMNVEK
LARKGYRVLVVEQTETPEQLELRRKEKGAKDKVVKREICAVVTRGTLTDGEMLSSNPDPS
YLMAVTESCQSSTNPNEKRVFGMCAVDVATSRIIIGQFEDDSECSALCCLLAELRPVEII
KPTNLLSLETERAMLRHTRTPLVNELVPTAEFWDADKTVHEVKTIYKCINDQSAAGSVDV
GTGAANTYEDDELGFLPAILSSLLRAGVNGSLALSALGGTLYYLKQAFLDVTLLRFAKFE
LLPSSGFSSIAQTPYMLLDAAALENLEIFENSGNGDSSGTLYAQVNHCVTAFGKRLLRTW
LARPLYHTDLIKERQDAVAGLKGESLSYALEFRKALSRLPDMERLLARIFASSEANGRNA
HTVVLYEDAAKKQLQQFISALRGCELMVQACSSLSVILKNVESTQLHHLLTTGKGLPNIN
SILKHFKDAFDWVDANNSGRIIPHKGVDLEYDSACGRVKEIESSLTKHLKEQQKLLGDSS
ITYVTIGKDSYLLEVPESLRGSVPRDYELCSSKKGFFRYWTPSIKKFLGELSLAESEKET
AFKNILLRLIGRFCEDHNKWRQLVSTTAELDVLISLAIASDFYEGPTCRPCVLGSSCSNE
VPCFSAKGLGHPILRSDSLGKGAFVPNDISIAGSGHASFILLTGPNMGGKSTLLRQVCLA
VILAQVGADVPAEQFELSPVDRIFVRMGSKDHIMAGQSTFLTELSETALMLSSATQHSLV
ALDELGRGTSTSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLAVDYRNNSKVSLCHMACQ
VGNGVEGAEEVTFLYRLTPGACPKSYGVNVARIAGLPDSVLRTAASKSREFEAVYGKHRS
KGSEDKLPMQSSLDEMVVFIRELISLTRLKTCEEGTCIRSLTQLQQRARMLLHQH
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgtcgcgtcgtcaaagcaatggtagatcacccctcgttaatcaacagagccag
attacttccttcttctccaagaaaaactcttcttccccatctccatcgcctcctcctcct
cttgccaaacatacctctaaactcaaccctatccctggccctaaacctaatccaagtaga
agtcccatacctactactccatcccctggggaacccaagctcaaaaagcctctccttgtc
attggccaatcgcctgcccccactccctcttctcccctcaacataacatttggcgatgaa
gtggttgacaagaggctaagggtttactggcccttggataaggcgtggtacgagggcgtt
gtcaagtctttcgataaggtctcgggcaagcatttgattcagtatgatgattctgaggaa
gaggagttggatttggggaaggagaagattgagtgggttgaagaaaccacgggaaggttt
aagcggttgcggcgagggggttctttgggttttaagaaagtggtgattgacgatgaggat
gatgacgtggcggatagtgcgaacgaaaagagcgacgatgatgattccagtgatgaagat
tgggggaagaacgccgagaaggaagtgagcgaggatgctgatgaggaagatatggatttg
gaggatgagaaagaggaggaagaagaattggaggaagaggaggtgggaatgaaaatatcg
aaaagaaagggcggtggaaagactgaatcaaagaaacggaaggcgaatggcgttgcaaaa
ccggagtccggtaaaaagagtaagaccagtgcgaatgttagtactaaggaagagtttaag
gtgccttcggtggaaccggtgaagaagattgaaactgataaggcatctactgctgacaag
gctttggtggttgatgagttagagaggtttgggaagcgtgaagcggagaagttgcacttc
cttggacttgaggtgcgtagagatgcaaataggaagcgtcctggagatgcaaactacaat
ccaaagactttatacttgcctcctggtttcttaaagagcctatcaggttgccagaggcaa
tggtgggagtttaagtcaaaacatatggacaaagttctattttttaagatgggtaaattt
tatgaactttttgaaatggatgcacatattggggcaaaagaactgaatttgcaatacatg
aagggggaacaacctcactgtggatttcctgagaagaatttctctatgaatgtggagaaa
ttagctcgaaagggttatcgagttcttgtagtagagcaaacggaaactcctgaacaactg
gagcttcgtcggaaagagaaaggtgccaaggataaggttgtcaagcgtgaaatatgtgct
gtggttaccagaggaaccctaactgatggagaaatgctgtcatcaaatcctgacccttct
tacctcatggcagtgactgaaagctgtcaaagttcaacaaacccgaatgagaagcgggtt
tttggcatgtgtgctgttgatgttgcaactagcaggattattattggacagtttgaggat
gattctgagtgcagtgcattgtgttgtctattggctgagctaaggccagtagaaattata
aaacccactaacctgctcagtcttgaaactgagagggcaatgctgagacatacaaggact
cccttggtaaatgaattggtccctactgcagaattttgggatgcagacaaaactgttcat
gaagtcaaaactatctacaagtgtattaatgatcaatcagctgctggatctgttgatgtg
ggtacaggtgctgctaatacttacgaggatgatgagttgggcttccttccagctatcctt
tccagtctactcagagctggtgttaatggaagcctagcactctcagctcttggaggcact
ctttattacctaaaacaggcttttctagatgtgacattacttagatttgcaaagtttgag
ttgcttccatcctctggcttcagtagcattgcgcaaacaccttatatgcttcttgatgct
gctgcccttgagaatcttgagatctttgaaaacagcggaaatggagactcttctgggacg
ctctatgcacaagtaaatcactgtgtaacagcattcgggaaaaggttgctaagaacatgg
cttgctagaccattatatcatactgatttgattaaggaacggcaagatgctgtagcaggc
ctaaagggtgaaagtctatcatatgcacttgaatttcgaaaggcattgtccaggcttcct
gacatggagaggctacttgcacggatctttgctagcagtgaggctaatggaagaaatgca
catacagttgttttatatgaagatgcggcaaagaagcaacttcagcaattcatatcagca
ctacgaggttgtgaattaatggttcaagcatgttcttcccttagtgttattctgaaaaat
gtggaatctacgcagcttcatcatttgttaacaactggtaaaggtcttccaaatatcaat
tccattcttaagcatttcaaagatgcctttgattgggttgatgccaacaattctggacgt
ataatacctcacaagggagttgatctggaatatgactcagcatgtggaagagttaaggag
attgaatctagtttgacaaaacacctcaaggagcagcagaagttacttggagattcatca
atcacctatgtcacgattggaaaagattcgtatctattggaagtgccagaaagcttgcgt
gggagtgtccctcgagattatgagttatgttcatccaagaagggcttcttccggtattgg
actccatctatcaagaagttcctgggagaactctcgctagctgaatctgaaaaggagacg
gcctttaagaacattcttctgaggttaattggacgattctgcgaggatcacaataaatgg
aggcaactagtttcaacaacagcagagctggatgtactgatcagtctagcaatagcaagt
gatttttatgaaggtcctacatgtcgtccttgtgtcttgggctcttcatgctcaaatgaa
gtgccgtgcttttctgcaaaaggtttaggacatcctattctcagaagtgattctttaggc
aagggtgcatttgtccccaatgacatcagtattgctggttctggccatgcaagttttatt
cttcttactggtcctaatatgggtggaaaatcaactcttcttcgccaagtttgcttggct
gtgattttggcccaggtaggagctgatgtccctgcagaacaatttgaactatctcctgtt
gaccgaatctttgttcggatgggttccaaagatcatattatggctggacagagtacattt
ttaacagagctttcagaaactgcattaatgctgtcctctgcgactcaacattcacttgtg
gcattagatgaacttggacgtggaacatcaacttctgatggacaagccattgcggaatcg
gttcttgaacattttgtacacaaggtgcagtgccgagggatgttttcaacacactaccac
cgtttagctgtggactataggaacaattccaaggtctctctctgtcacatggcgtgccaa
gtaggaaatggagttgaaggagctgaagaagttacatttctttacaggttgactcctggt
gcctgtccaaaaagttacggtgtgaatgttgcacgaatagctgggcttcctgactcagta
ctacgaacagctgccagtaagtctagagaatttgaggctgtatacgggaaacaccgaagc
aagggatctgaagacaagttgccaatgcaaagtagtcttgacgaaatggtagtttttatt
cgggaactaatcagccttacacgcttaaagacatgcgaggagggcacttgtattaggtca
ttgactcaacttcaacagagggcaaggatgcttctgcatcaacattga
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