Glycine soja (wild soybean): 114367479
Help
Entry
114367479 CDS
T06057
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03020
RNA polymerase
gsj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114367479
09124 Replication and repair
03420 Nucleotide excision repair
114367479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114367479
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114367479
Enzymes [BR:
gsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114367479
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114367479
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114367479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF5938
Motif
Other DBs
NCBI-GeneID:
114367479
NCBI-ProteinID:
XP_028180469
LinkDB
All DBs
Position
9:complement(47284900..47293880)
Genome browser
AA seq
1783 aa
AA seq
DB search
MDVRFPFSPAEVAKVATVQFGIISPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTI
DRKLKCDTCTGSMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILANEDDHK
FKLALRIRNPKNRLRKILDACKNKSKCEGGDDIDIHGKDTGEPVKKSRGGCGAQQPKITI
EGMKINAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLKRISDEDCQLLGLNPQYAR
PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQEKNGSPAHIIS
EFVQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSLETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT
LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPTILKPEPLWTGKQVFNLIIPKQIN
LIRFSSWHSDDERGPITPGDTMVRIEKGELLTGTLCKKTLGASAGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSMGIGDTIADASTMEAINQTISLAKEKVKQLIRDAQEKKL
EAEPGRTMMDSFENRVNQTLNKARDDAGNSAGNSLSESNNLKAMVTAGSKGSNINISQMT
ACVGQQNVEGKRIPYGFVDRTLPHFTKDDHGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMLKYDGTVRNSLGDVIQFLYGEDGMDAIWIETQK
LDTLKMKKTEFDRVFRYEFDEENWKPNYMLQEPVEDLKTIREFRNVFEAEVQKLEADRHQ
LAIEIASNGDNSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP
GEDALSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGEIESRFLQSLVVPG
EMIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELINVAKSIKTPSLSVYLK
PDAGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVMSYYEMPDEEV
ALEKISPWLLRVELNREMMVDKKLSMADIAQKINLEFDDDLSCIFNDDNAEKLILRIRIM
NDDAPKGEVQDESAEDDVFLKKIETNMLTEMTLRGIPDINKVFIKNAKVQKFDENEGFKS
NGEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRIVISFDG
SYVNYRHLAILCETMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAAYAETDS
LRGVTENIILGQLAPIGTGQCALYLNDGMLKNAIELQLPSYTDGLDFGIMPGATPYHEGT
MMSPSYLLSPNLRLSPSSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSPTSPGY
SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSPTS
PSYSPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYS
PTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPY
NSGVSPDYSPTSPQFSAGYSPSQPGYSPSSTSQDTPQTSDKDE
NT seq
5352 nt
NT seq
+upstream
nt +downstream
nt
atggatgttcgattccctttctccccagctgaggtcgccaaagttgccacggttcagttt
ggaattatcagtcccgacgagatcaggcaaatgtctgtggtgcaaatcgagcacggtgag
acaaccgagagagggaagccgaagatcggaggattgagcgaccctcggctcggaactatt
gacagaaagctcaagtgtgacacttgtacgggcagtatggctgagtgccctggccatttt
ggccacttggagcttgccaagccaatgttccatattgggtttttgaagactgtattagct
ataatgcgttgtgtttgcttcaactgctccaaaattctagctaatgaggatgatcacaag
ttcaagctagctttaagaatcaggaatcccaaaaataggctgagaaagattctggatgcc
tgcaaaaacaaaagcaagtgcgaagggggagatgatattgacattcatggtaaagatacc
ggggagccggttaaaaagagtcgcggtggctgcggtgctcagcagccgaagattactatt
gaggggatgaaaataaatgcagagtataaagctcagaggaagaaaagtgatgaccaagaa
cagcttcccgaacccgtggaaaggaaacagactctttctgcagaaagggttcttagtgtt
ctgaaaaggataagcgacgaggactgtcagttgttgggcttgaatcctcagtacgctcgt
cctgactggatgattttacaagttcttccaattcctcctcaacctgttaggccttctgta
atgatggacacatcctccaggagtgaggatgatttaactcaccaactggccatgatcatc
aggcacaatgagaatctgaagagacaggagaagaatggatctcctgcacatattatttcc
gagtttgtgcagttattgcagttccacgtagcaacatattttgataatgagttacctgga
ttgccaagggctactcagagatctggaaggccaatcaaatcaatatgtagcaggctcaag
gcaaaagaaggccggattagaggtaacttgatgggtaaaagagttgatttttctgctcga
acagtcattacacctgatccaactatcaacattgatcaattgggagtaccatggagtatt
gcgttgaatctaacataccctgagactgtgactccatataacattgaaaggttgaaggaa
cttgttgagtatggaccccatcctccacctggaaaaactggtgccaagtatatcattcgt
gatgacggacaaagacttgatctcagatatttaaagaaaagcagtgatcaccatttggag
cttggctacaaggtcgagcgtcatttgaatgatggagactttgttctcttcaatcgtcag
cctagtcttcataaaatgtctatcatgggacacagaatcaaaatcatgccttattctact
ttccggcttaacttgtccgtaacttcaccatataatgctgattttgacggggacgaaatg
aatatgcatgttcctcagagtttagaaaccagagctgaggtgttagagctgatgatggtg
cctaaatgcattgtgtcaccacagtcaaacaagccagtgatgggaattgtccaagataca
cttctaggatgcaggaaaatcaccaagagagacactttcatcacaaaggatgtttttatg
aacatattgatgtggtgggaagattttgatgggaaagttcctgctcctacaatattgaag
ccagaaccattgtggacagggaaacaagttttcaatctcatcattcctaaacaaataaat
ctaattagattttcgagctggcatagtgatgatgaacggggacccataacccctggggat
accatggttagaattgaaaaaggggaactacttaccggaacactttgcaaaaagactctt
ggagcatccgccggaagtctcattcatgtgatttgggaagaggttggccctgatgcagct
cggaaatttcttggtcatactcagtggcttgtaaactactggcttttgcagaatgctttt
agcatgggaattggtgatacaatagctgatgcttccactatggaagccataaatcagact
atttcattagctaaggagaaagtgaaacaacttatcagggatgctcaagagaagaagttg
gaggccgaacctggtcggacaatgatggattcatttgaaaatagagtgaaccagactcta
aataaagctcgtgatgatgctggaaacagtgctggaaatagtttatctgagagcaacaat
ctgaaagcaatggtgacagctggttcgaaaggaagtaacatcaacatatctcaaatgact
gcttgtgtggggcaacagaacgttgaggggaagcgaattccatacggattcgtagaccgg
acattgcctcacttcacaaaagatgatcatgggcctgaaagtcgtggctttgtggagaac
tcatatctacgtggactgacccctcaagagttctttttccatgccatgggtggtagggaa
ggtcttattgatactgccgtgaagacctccgaaaccgggtacattcagaggcgactcgtg
aaggctatggaggacatcatgcttaaatatgatgggacagttagaaactctttgggagac
gtcatacaatttctctacggagaagatggtatggacgctatttggattgaaacacagaag
ctggatacccttaaaatgaagaaaacagaatttgatagggtgtttaggtatgaatttgac
gaggaaaactggaagcctaattacatgcttcaagagcctgtagaagacttgaaaaccatc
agagagtttcgtaatgtgtttgaggcagaagttcaaaagcttgaagctgatagacatcaa
ctcgcaatagagatagcctctaatggtgacaattctctgccactgcctgttaacctcaag
aggcttatctggaatgctcagaagacatttaaggttgacttccgaaggccttctgatatg
catccaatggaaattgtggaagccatcgataagctccaggagcggcttaaggttgttccc
ggtgaggacgccttgagtcaagaagctcaaaagaatgctactctcctcttcaatattctg
ctccgcagcactttcgccagtaaaagggtcttggaggaatacaggctttctcgcgagtca
tttgagtgggtagtcggagaaatagaatcaaggttcttgcagtcgcttgtggtccccgga
gaaatgattggtgtcgtggctgcacaatcaattggtgaacctgctactcagatgactctc
aacactttccactttgccggtgtcagcgcaaagaacgttactcttggtgttcctaggtta
agggaactcattaatgtcgccaagagtattaaaacgccttctctctctgtgtacttgaaa
cctgatgctggtaagactaaagagagagccaagactgtgcagtgtgctttagaatatacc
actctcaggagtgtcactcaagctacagaggtgtggtatgatccagacccgatgagtaca
ataattgaagaggatgtggattttgtcatgtcctactatgaaatgcccgatgaagaagtt
gctcttgaaaaaatctcaccttggttgcttcgcgtggagctgaatcgtgaaatgatggtg
gataagaagttgagtatggctgacattgcacagaagattaaccttgaatttgatgatgat
ttgagttgtatatttaacgatgacaatgctgaaaaacttatacttcgtatccgtataatg
aatgatgatgcaccaaagggtgaggttcaggatgaatccgctgaagatgatgttttcttg
aagaaaatagaaaccaacatgctgactgaaatgactctacgaggaatcccagacataaac
aaggtttttataaaaaatgcgaaagttcagaagtttgatgagaacgaaggttttaagtct
aatggggaatggatgcttgataccgaaggtgtgaacctgctagctgtgatgtgccatgaa
gatgttgacgcgacaaggacaacaagcaaccacttgattgaggttattgaagttcttggt
attgaggcagttaggcgatctctactggatgaattgagaattgtaatttcgtttgacggt
tcttatgtaaattacaggcatttggctattctatgtgaaacaatgacgtatagggggcat
ttaatggcaataacacgtcacggcatcaacaggaatgatacagggccaatgatgagatgc
tcatttgaagagacagttgatattctgcttgatgctgcagcatatgcagagactgatagc
ttgaggggagtcacagaaaacataatcttagggcagctcgcccccattgggacaggccaa
tgtgccttgtatcttaatgatggcatgctgaagaatgccattgagctacaactgcctagt
tatacagatggtcttgatttcggtatcatgcctggagcaactccatatcatgaaggcacc
atgatgtctcccagttatctgttgagccccaatttacgcctgtctcctagttcggatgca
cagttttcgccttatgttggcggcatggcgttttctccttcttcatctcctggttatagt
ccatcatcccccggctatagtccatcttcgcccgggtacagccccacgtcgcccggttac
agtcccacttcccccggttacagtcccacctctccaacttatagccctagctctcccgga
tatagtccaacaagtccagcttattcgcctacatctcccagctacagccccacctcacct
gcatacagcccaacttctcctgcatacagctccacttcacctgcatacagtcctacttct
ccatcatacagccccacttcacctgcatatagtcctacttctccatcatatagcctgaca
tctccttcctacagtccaacttcaccctcttacagccccacgtctccctcatatagtcct
acctctcctgcatacagccccacatctccctcatatagcccaacatctccatcttatagt
cctacttcccccagttacaatccacaatcagcaaaatatagtccttcgttagcttattct
ccaagcagtccaagattgtctcccacatctccaaactatagcccgacgtctccctcgtat
tcaccaacatctccttcttattctccatcaagcccaacatacagtcccagcagtccatat
aattctggtgtgagcccggactatagcccaacttccccccaatttagtgcgggttactca
ccaagtcaacccggttactcaccgtcgtcaaccagccaggacactccacaaactagtgac
aaggatgaatga
DBGET
integrated database retrieval system
