Glycine soja (wild soybean): 114374109
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Entry
114374109 CDS
T06057
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03020
RNA polymerase
gsj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114374109
09124 Replication and repair
03420 Nucleotide excision repair
114374109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114374109
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114374109
Enzymes [BR:
gsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114374109
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114374109
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114374109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
DUF5938
Motif
Other DBs
NCBI-GeneID:
114374109
NCBI-ProteinID:
XP_028187512
LinkDB
All DBs
Position
11:6133657..6142283
Genome browser
AA seq
1827 aa
AA seq
DB search
MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK
FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI
EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN
LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL
EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ
LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP
GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR
SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV
ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP
NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP
YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP
SSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYS
PSQPGYSPSSTSQYTPQTSDKDDGGTR
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atggatatccgattccctttctctccggcggaggtcgccaaagtccgcatggtccagttc
ggaatactcagtcctgacgagatcaggcaaatgtctgtggtgcaaatcgagcacggggag
actacggagagagggaagccgaaggttggaggattgagtgaccctcggcttggaaccatt
gacagaaagttgaagtgtgaaacttgcacggcgagtatggctgagtgccctggccatttt
gggcacttggagcttgctaagccaatgttccatattggttttttgaagaccgtcttaact
ataatgcgttgtgtttgcttcaactgctctaaaattcttgctgatgagaatgatcacaag
tttaagcaagctttgagaatcaggaatcccaaaaacaggctaaaaaagattctggatgct
tgcaaaaacaaaagcaagtgtgaagggggagatgagattgatattcccggtcaagatact
gatgagcctgttaaaaagagtcgtggtggctgtggtgctcagcagccgaagattactatt
gaggggatgaaaatgattgcagagtataaagcacaaaggaagaaaagtgatgaccaagaa
cagcttcctgaacctgtggaaaggaaacagactctttctgcagaaagggttcttggtgtt
ctgaaaaggataagtgatgaggactgtcagttgttgggcttgaatcctaagtatgcccgc
cctgactggatgattttacaagttcttccaattcctcctccacctgtgagaccttctgta
atgatggacacatcctccaggagtgaggatgatttaactcatcaactggccatgatcatc
aggcacaatgagaatctgaagagacaggagaggaatggatctcctgcgcatattatttcc
gagtttgctcagttattgcagttccacatagcaacatattttgataatgagttgcctgga
ttgccaagggctactcaaagatccggaaggcctatcaaatcaatatgtagcaggctcaag
gcaaaggaaggccggattagaggtaacttgatgggtaaaagagttgatttttctgctcga
acagtcattacacctgatccaacgatcaacattgatcaattgggagtaccgtggagtatc
gcattgaacctaacatatcctgagactgtgactccatataacattgaaaggttgaaggaa
cttgttgagtatggaccccatccaccacctggaaaaactggtgccaagtatatcattcgt
gatgacggacaaagacttgatctcagatatttaaagaaaagtagtgatcaccatttggag
cttggctacaaggttgagcgtcatttgaatgatggagactttgttctcttcaatcgtcag
cccagtcttcataaaatgtctatcatggggcatagaatcaaaatcatgccttattctact
ttccggcttaacttgtctgtaacttcaccatataatgctgattttgatggggacgaaatg
aatatgcatgttcctcagtcttttgaaaccagagctgaggttttggagctgatgatggtg
cctaaatgcattgtgtcaccacagtcaaacaggccagtgatgggaattgtccaagataca
cttttaggatgcagaaaaatcactaagagagatactttcatcacaaaggatgtttttatg
aacatattgatgtggtgggaagattttgatgggaaagttcctgctcctgcaatattaaag
ccagaaccattgtggacagggaaacaagttttcaatctcatcattcctaaacaaataaat
ctaattagatattctagctggcacagtgagagtgaaaggggatccataacccctggggat
accatggtcagaattgaaaagggggagctacttactggaacactttgcaaaaagacgctt
ggaacatctactggaagtctcattcatgtgatttgggaagaggttggccctgatgctgct
cggaaatttcttggtcatactcagtggcttgtaaactactggcttttgcagaatgctttt
agcattggaattggtgatacaattgctgatgcttccactatggaaaccataaatcagact
atttcagcagctaaggagaaagtgaaacaacttattagggaagctcaagagaagaagttg
gaggctgaacctggtcggacaatgatggattcatttgaaaatagagtgaaccagactctc
aatagagctcgtgatgatgctggaaatagtgctcaaaaaagtttatctgagagcaacaat
ctgaaagcaatggtgacagctggttccaaaggaagttttatcaacatttctcaaatgact
gcttgtgtgggccaacaaaacgttgagggtaagcgaattccatatgggttcatagaccgt
acattgcctcacttcacaaaagatgattatgggcctgaaagtcgtggctttgtggagaac
tcatatctacgtggacttacccctcaagagttctttttccatgccatgggtggtagggaa
ggtcttattgatactgcagtgaagacctctgaaactgggtacatccagagacgacttgtg
aaggctatggaggacatcatggttaaatatgatgggacagttagaaactctttgggagat
gtcatacaatttctctacggagaagatggtatggatgctgtttggattgaaacacagaag
ctggattcccttaaaatgaaaaaaacagagtttgacagggtgtttaggtatgaattcgat
gatgaaaactggaagcctacttacatgcttgaggagcccgtagaagacttaaaaaccatc
agagagtttcgcaatgtgtttgaggctgaagttcaaaagcttgaagctgatagatatcaa
cttgcaaccgagatagccactactggtgacagttctctgccactacctgttaacctgaag
agacttatctggaatgctcagaagacatttaaggttgacttccgaaggccatctgatatg
catccaatggagattgtggaagccattgataagctccaggagcggcttaaggttgttccg
ggtgaagatctcttgagtcaagaagctcagaagaatgctactctcctgttcaatattctg
ctccgcagcacttttgccagtaaaagggtcttggaggaataccggctttctcgtgaggca
tttgagtgggtagtgggagaaatagaatcaaggttcttgcagtcccttgtagcctctgga
gaaatgattggttgtgtggcagcacaatcaattggtgaacctgccactcagatgactctc
aacactttccactatgctggtgtcagtgcaaagaatgttactcttggtgttcctaggtta
agggaaatcattaatgtggcaaagagaattaaaacgccttctctgtctgtgtacttgaga
tcagatgttggtaagactaaagagagagccaagagtgtgcagtgtgctttagaatatacc
actctcaggagtgtgactcaagctacagaggtgtggtatgatccagatccgatgagtaca
ataattgaagaggacgctgattttgtgaagtcctactatgaaatgcctgatgaagaagtt
gctcttgaaaaaatttcaccttggttgcttcgcatagagctgaatcgtgaaatgatggtg
gataagaagttgagtatggctgacattgcagagaagattaaccttgaatttgatgatgat
ttgacttgtatatttaatgatgacaatgctgaaaaacttattcttcgtatccgtattatg
aatgatgaagcacccaagggtgagattcaggatgagtctgctgaagatgatgttttctta
aagaaaatagaaagcaacatgctgactgaaatgaccttacgaggtatcccagacatcaat
aaggttttcataaaaaatactaaagttcagaagtttgatgagaatcaaggttttaagcct
aatgaggaatggatgcttgataccgaaggtgtcaaccttctagctgtgatgtgccatgaa
gatgttgatgcgaccaggaccacaagcaaccacttgattgaagtcattgaagttcttggt
attgaggcagttcggcgagctcttctggatgaattgcgtgttgtcatttcttttgatggt
tcttatgtcaattacagacatttggctattctttgtgataccatgacttatcgagggcat
ttgatggcaattacacgtcatggtatcaaccgaaatgatactgggccaatgatgagatgc
tcatttgaagaaacagttgatattctgcttgatgccgcagtatatgctgagactgattac
ttgaggggagtcactgaaaacataatgttaggtcaacttgcccccattggcactggcgaa
tgtgccttgtatcttaatgatgaaatgctgaaaaatgccattgagctccaattgcctagt
tatatggatggtcttgattttggtatgactcctgcccgttccccaatatctggaactcca
tatcatgaaggcttgatgtctcccagttatttgttgagcccaaatttacggctctctcca
actagcgatgcacagttttcaccttatgttggtgggatggcattttctcctacttcatct
cctggttacagcccatcatccccaggctatagtccctcatcacccgggtacagtcccact
tcacccggatacagccccacgtcacccgggtacagtcccacgtcacctgggtacagtccc
acctctccgacttatagtcctagctctccgggatatagtcctacaagtccagcttattcg
cctaccagtccatcctactctcccacatcacccagctacagtcctacatcacccagctac
agccctacatcacccagctacagccccacctctcccagctacagccccacttcaccagct
tacagccccacttcaccagcttacagccccacatctccttcctatagtccgacttctcct
tcttatagtccaacttcaccttcctacagccctacatcaccctcttacagtccaacgtct
ccatcatatagtcctacatcacctgcttacagccccacatcgcctggatacagcccaacc
tcaccctcatatagcccaacctcgccatcgtatagccctacttcccctagttacaatcca
cagtcagcaaagtatagtccttcgttagcatattctccaagcagtccgagattgtctcca
tcaagtccatatagtcccacatcaccaaactatagcccaacgtcgccatcatattcccca
acatctccatcttattctccatcaagcccaacatacagtcccagcagcccttataattct
ggtgtgagcccagactatagcccaagttcgccccaatttagtcccagtacgggttactca
ccaagtcaacctggttactcaccatcttcaaccagccagtacactccacaaactagtgac
aaggatgatggaggcactcgctga
DBGET
integrated database retrieval system
