Glycine soja (wild soybean): 114400173
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Entry
114400173 CDS
T06057
Name
(RefSeq) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
114400173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114400173
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
114400173
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
CDC45
Motif
Other DBs
NCBI-GeneID:
114400173
NCBI-ProteinID:
XP_028218293
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Position
19:complement(46903294..46913415)
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AA seq
1273 aa
AA seq
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MAPSRRNTNGRSPLVNQQSQITSFFTKSASPSPSPTLSKTNPNPNPNPNPSPTPATPSPL
NPKRSKPLLVIGASTSPPSASPSLYFQELIGRRIKVYWPLDKAWYEGSVKSFDSLTSKHV
VRYDDGEEESLDLSKEKIEWLQESSSKKLKRLRRGVPAVRKMMIDDDDEEVEEEESHKKD
DDDDDDSNDEDWGMKAALEDAGDAEEDTDLEDENDVAERAKGKKVETKKRKLSGTEKQEP
AKKSKSGVEVGKGAFKLSVLEPTSNLEIKETSNGTDNVAITEISERFALREAQKLRFLKE
DRRDAKRRRPGDENYDSRTIYLPPDFLRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELF
EMDAHVGAKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRR
KEKGSKDKVVRREICSVVTKGTLTDGELLSANPEAAYLMALTEHHENHPTEVSEHLYGVC
IVDVATSRVILGQFKDDLECSVLCCILSEIRPVEIVKPAKLLSAETERVLLKHTRDPLVN
ELVPIVEFWDADKTVDQLKRIYGNSNDVSVNNNELDCLPDVLLELVKTGDDSRSALSALG
GALYYLRQAFLDERLLRFAKFELLPCSGFGDLASKPYMVLDAAALENLEIFENSRNGDSS
GTLYAQLNQCVTAFGKRLLKTWLARPLCHVESVKERQEAVAGLKGVNLPSALEFRKALYK
LPDMERLLARIFSSSEASGRNANRVVLYEDASKKQLQEFILALRGCEQMAQACFSLGVIL
SHVKSRQLHHLLTPGKVLPDVCMDLNHFKDAFDWVEANNSGRIIPREGVDTEYDSACKAV
KEIESSLLKHLKEQMKLLGSTSITYVNVGKDTYLLEVPENLSKNIPRDYELRSSRKGFFR
YWSPDIKVFLRELSHAESEKESLLKSTLQRLIGRFCEHHAKWKQLVSTTAELDVLISLAI
AGDYYEGPTCRPSFVGTLCTKEAPYLHAKSLGHPVLRSDTLGKGDFVPNDITIGGSDHAS
FILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQS
TFLTELSETASMLSSATCNSLVALDELGRGTATSDGQAIAESVLEHLVRKVQCRGLFSTH
YHRLAVDYLKDPKVCLCHMACQVGSGIAGLDEVTFLYRLTPGACPKSYGVNVARIAGLPT
SVLQKAAAKSREFEATYGKCRKVSTVTNSPNKNWVDEIAAIIQILNNAATQETICVGSLS
ELQDKARELMQGC
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggctccttcccgccgcaacaccaacggtcgatcaccgctcgtcaatcaacagagtcaa
atcacttccttcttcaccaaatccgcttccccttcgccctctcccactctctccaaaacc
aaccctaaccctaaccctaaccctaaccctagtcccacccctgctactccttctcctctc
aatcccaaacgctccaagccccttcttgtaatcggcgcttccacttctccaccctccgct
tcgccttctctctactttcaagagctcattggccgaaggatcaaggtttattggcccttg
gacaaagcctggtacgaaggctccgtcaaatccttcgatagcctcacctctaagcacgtg
gttcgttacgacgatggcgaagaagaatccctcgacctctccaaggagaagatcgagtgg
cttcaggaatcgtcttccaagaaacttaaacgcctgcgtcgcggcgtccccgccgttagg
aagatgatgatcgacgacgacgacgaagaagttgaagaagaagaaagtcacaaaaaagat
gatgatgatgatgatgattccaatgacgaagattgggggatgaaggctgcattggaggat
gctggggatgccgaagaagatacggatttagaggatgaaaacgacgtggcagagagggct
aaagggaaaaaggtagagactaaaaagcggaaactaagcggaacagagaaacaagagccg
gcaaaaaagagcaagagtggagtggaagttggtaagggagctttcaagctctcagtgttg
gagcctacgagtaatttggagattaaagagacatctaatggcactgacaatgttgcgatt
actgagatctctgaaagatttgcactgcgtgaagctcagaaattgcgcttcctgaaggaa
gatcgcagggatgccaagcgaaggcgaccaggggatgaaaattatgattcaagaacaatc
tacttgcctcctgatttcttaaggagtttgtcagatggtcagaaacaatggtgggagttc
aagtcaaagcatatggacaaagttttgtttttcaagatgggtaaattttatgagcttttt
gagatggatgcacatgtaggtgcgaaagagcttgacttgcagtatatgaagggagaccaa
cctcattgtggatttccagagaagaatttctcaatgaacgtggagaaactagctaggaag
ggttatcgagttcttgttgtagagcagactgaaacacctgaacagctggagcttcgtcgc
aaggagaagggctctaaagataaggttgtaaggcgtgaaatatgttcagtggttacaaaa
ggtacattaacagatggggagttgctgtcagcaaacccagaagctgcatatttaatggcc
ctgacggagcatcacgaaaatcacccaactgaagtttcagagcatctctatggtgtttgt
atagttgatgttgccacaagtagagtcattcttggacagtttaaggatgacttggagtgc
agtgtcttgtgctgtatcttatctgagatcaggcctgttgaaattgtgaaacctgctaaa
ctactcagtgctgaaacggagagagtactgctgaagcataccagagatcctttagtgaat
gaattagttccaattgtggaattctgggatgctgacaaaactgtggatcaattaaagaga
atttatgggaactctaatgatgttagtgttaacaataatgagttagattgcctgccagat
gttttactggagctggtgaaaacaggtgacgacagtagaagtgcactttcagcactaggt
ggtgctctgtattatctgagacaggcttttctagatgagagattgcttagatttgcaaag
tttgagttacttccttgttctggttttggtgatcttgcttcaaaaccctacatggttctt
gacgcggctgccctggagaatcttgagatttttgagaatagcaggaatggagattcttca
ggcacgctctatgcccaactaaaccaatgcgttactgcttttggaaagagattgctaaag
acttggcttgcaagaccattatgtcatgtggagtcagttaaggaacgccaggaagctgtt
gcaggtttgaagggagttaatctaccttctgcactagaatttcgaaaagcattatacaag
ctacctgacatggagcggttgcttgcccgcatcttttcctctagtgaagctagtggaagg
aatgctaatagagtggttctgtacgaggatgcttctaagaagcaactgcaagagtttatt
ttagctctgcgtggttgtgaacagatggctcaagcatgcttttcacttggtgtcattttg
agtcatgtaaaatctagacaacttcatcatctgttaacaccgggtaaagttcttcctgat
gtttgtatggatcttaatcatttcaaggatgcctttgattgggtggaagccaataattct
gggcgtataatacctcgtgaaggagttgacacagagtatgactcagcctgtaaggcggtt
aaagagattgagtccagtttattgaagcatcttaaggaacaaatgaaactacttggaagc
acatcaattacttatgtcaatgttggaaaggatacatacctattggaagttccagaaaat
ttgtctaagaatattcctcgagattatgaactgcgctcatccagaaaaggcttctttaga
tactggtctccagatattaaagttttcttaagagagctctcccatgctgaatctgaaaag
gagtccttgttgaaaagtacattgcagagattaattgggcgtttttgtgaacatcacgct
aagtggaagcagttggtgtctacaactgcagaactggatgtcttgatcagtttagcaatt
gctggtgactactatgaaggaccaacatgtagacctagttttgtaggcacattatgtaca
aaagaagctccttacctccatgccaaaagtttgggacacccagtccttaggagtgatacc
ttaggcaagggtgactttgtacccaatgacataaccattggtggttcagatcatgctagc
tttattcttctaacaggtcctaacatgggtgggaagtcaacccttcttcgtcaagtttgc
ttgactgtgattttggcccaggtaggagctgatgtcccagcagaaagttttgatttgtcc
cctgttgaccggatttttgttagaatgggggccaaagataatataatggcaggccaaagt
acatttttaactgagctttcagaaactgcatcaatgctgtcatcagctacttgtaattca
ttggtggctctggatgagcttgggcgagggactgcaacttctgatgggcaagccattgcg
gaatcagtattagaacatcttgtgcggaaggtgcagtgtcgcggattgttttctacccac
tatcatcgattagctgttgattatctcaaagatccgaaggtctgtctctgccacatggca
tgccaagttggtagtggaattgcaggtttagacgaagtcacctttctttacaggcttacc
cccggtgcttgccccaagagctatggtgttaatgttgctcggatagctggccttccaact
tctgtgcttcagaaggctgctgccaaatccagagaatttgaggccacttatggtaaatgc
agaaaggtatctactgtaacaaactctcccaataaaaattgggttgatgagatagcagca
atcattcaaatattgaacaacgcggcaacacaggaaaccatttgcgttggttccctaagt
gaacttcaggataaagcaagagaactaatgcaaggatgttaa
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