Glycine soja (wild soybean): 114419458
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Entry
114419458 CDS
T06057
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03020
RNA polymerase
gsj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114419458
09124 Replication and repair
03420 Nucleotide excision repair
114419458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114419458
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114419458
Enzymes [BR:
gsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114419458
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114419458
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114419458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
114419458
NCBI-ProteinID:
XP_028240933
LinkDB
All DBs
Position
1:complement(50552114..50560764)
Genome browser
AA seq
1827 aa
AA seq
DB search
MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK
FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI
EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN
LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKL
EAEPGRSMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQM
LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRFQ
LATEIATTGDSSLFLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP
GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR
PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV
ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP
NEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP
YHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP
SSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYS
PSQPGYSPSSTSQYTPQTSDKDDRGTR
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atggatatcagatttcctttctctccggcggaggtagccaaagtccgcatggtccagttc
ggaatactcagccccgacgagatcaggcaaatgtctgttgtacaaatcgagcacggcgag
acgacggagagagggaagccgaaggttggaggattgagtgaccctcggcttggaactatt
gaccgaaagttgaagtgtgagacttgtaccgcgagtatggccgagtgccctggccatttt
ggccacttggagcttgctaagccaatgttccatattgggtttttgaaaactgtcttaacc
ataatgcgttgtgtttgcttcaactgctctaaaattctagctgatgagaacgatcacaag
tttaagcaggcgttaagaatcaggaatccaaaaaaccggctgaaaaagattctggatgct
tgcaaaaacaaaagcaagtgtgaagggggagatgagattgacattcctggtcaagatact
gaggagtcagttaaaaagagtcgtggtggctgtggtgctcagcagccgaagattactatt
gaggggatgaaaatgattgcagagtataaagctcaaaggaagaaaagtgatgaccaagaa
cagcttcctgaaccagtggaaaggaaacagactctttctgcagaaagggttcttggtgtt
ctgaaaaggataagtgatgaggactgtcagttgttgggcttgaatcctaagtatgcccgt
cctgactggatgattttacaagttcttccaattcctcctccacctgtgagaccttctgta
atgatggacacatcctcaaggagtgaggatgatttaactcatcagctggccatgatcatc
aggcacaatgagaatctgaagagacaggagaggaacggatctcctgcgcatattatttcc
gagtttgctcagttgttgcagttccacatagcaacatattttgataacgagttgcctgga
ttgccaagggctactcaaagatctggaaggcctatcaaatcaatatgtagcaggctcaag
gcaaaggaaggccggattagaggtaacttgatgggtaaaagagttgatttttctgctcga
acagtcattacacctgatccaacaatcaacattgatcaattgggagtaccatggagtatc
gcattgaacctaacataccctgagaccgtgactccatataacattgaaaggttgaaggaa
cttgttgagtatggaccccatcctccacctggaaaaactggtgccaagtatatcattcgt
gatgacggacaaagacttgatctcagatatttaaagaaaagtagtgatcaccatttggaa
cttggctacaaggttgagcgtcatttgaatgatggagactttgttctcttcaatcgtcag
cctagtcttcataaaatgtctatcatggggcatagaatcaaaatcatgccttattctact
ttccggcttaacttgtctgtaacttcaccatataatgctgattttgatggggacgaaatg
aatatgcatgttcctcagtcttttgaaaccagagctgaggtgttggagctgatgatggtg
cctaaatgcattgtatcaccacagtcaaacaggccagtgatgggaattgtccaagataca
cttttaggatgcagaaaaatcactaagagagatactttcatctcaaaggatgtttttatg
aacatattgatgtggtgggaagattttgatgggaaagttcctgctcctgcaatattaaag
ccagaaccattgtggacaggcaaacaagttttcaatctcattattcctaaacaaataaat
ctaattagatattctagctggcacagtgagagtgaaaggggatccataacccctggggat
accatggtcagaattgaaaagggggaactacttactggaacactttgcaaaaagacgctt
ggaacatatagcggaggtctcattcatgtgatttgggaagaggttggccctgatgcagct
cggaaatttcttggtcatactcagtggcttgtaaactactggcttttgcagaatgctttt
agcattggaattggtgatacaattgctgatgcttccactatggaaaccataaatcagact
atttcagcagctaaggagaaagtgaaacaacttattagggaagctcacgagaaaaagttg
gaggctgaacctggtcggtcaatgatggattcatttgaaaatagagtgaaccagactcta
aatagagctcgtgatgatgctggaaatagtgctcaaaaaagtttatctgagagcaacaat
ctgaaagcaatggtgacagctggttccaaaggaagttttatcaacatatctcaaatgact
gcttgtgtgggccaacaaaatgttgagggtaagcgaattccatatgggttcatagaccgt
acattgcctcacttcacaaaagatgatttagggcctgaaagccgtggctttgtggagaac
tcatatctacgtggactaacccctcaagagttctttttccatgccatgggtggtagggaa
ggtcttattgatactgcagtgaagacctctgaaactgggtacatccagaggcgacttgtg
aaggctatggaggacatcatggttaaatatgatgggacagttagaaactctttgggagat
gtcatacaatttctctacggagaagatggtatggatgctgtttggattgaaaaacagatg
ctggattcccttaaaatgaaaaaaacagaatttgacagggtgtttaggtatgaattcgat
gatgaaaactggaagcccacttacatgcttgaagagcctgtagaagacttaaaaaccatc
agagagtttcgtaatgtgtttgaggctgaagttcaaaagctagaagctgatagatttcaa
cttgcaactgagatagccactactggtgacagttctctgtttctacctgttaacctgaag
agacttatctggaatgctcagaagacatttaaggttgacttccgaaggccttctgatatg
catccaatggagattgtggaagccattgataagctccaggagcgacttaaggttgttcct
ggtgaagatctcttgagtcaagaagctcagaagaatgctactcttctgttcaatattctg
ctccgcagcacttttgccagtaaaagggtcttggaggaatacaggctttctcgtgaggca
tttgagtgggtagtgggagaaatagaatcaaggttcttgcagtcccttgtagcctctgga
gaaatgattggttgtgtggcagcacaatcaattggagaacctgctactcagatgactctc
aacactttccactatgctggtgtcagtgcaaagaatgttactcttggtgttcctaggtta
agggaaatcattaatgtggcaaagagaattaaaacgccttctctgtctgtgtacttgaga
cctgatgttggtaagactaaagagagagccaagagtgtgcagtgtgctttagaatatacc
actctcaggagtgtgactcaagctacagaggtgtggtatgatccagacccgatgagtaca
ataattgaagaggacgttgattttgtgaagtcctactatgaaatgcctgatgaagaagtt
gctcttgaaaaaatttcaccttggttgcttcgcatagagctgaatcgtgaaatgatggtg
gataagaagttgagtatggctgacattgcagagaagattaaccttgaatttgatgatgat
ttgacttgtatatttaatgatgacaatgctgaaaaacttatacttcgtatccgtattatg
aatgatgaagcacccaagggtgagattcaggatgagtctgctgaagatgatgttttctta
aagaaaatagaaagcaacatgctgactgaaatgaccttacgaggtatcccagacatcaat
aaggttttcataaaaaatactaaagttcagaagtttgatgagaatcaaggttttaagcct
aatgaggaatggatgcttgatactgaaggtgtcaaccttctagctgtgatgtgccatgaa
gatgttgacgtgaccaggaccacgagcaaccacttgattgaagtcattgaagttcttggt
atcgaggcagttcggcgagctcttctggatgaattgcgtgttgtcatttcttttgatggt
tcttatgtcaattacaggcatttggctattctttgtgataccatgacttatcgagggcat
ttgatggcaattacacgtcatggtatcaaccgaaatgatactgggccaatgatgagatgc
tcatttgaagagacagttgatattctgcttgatgctgcagtatacgctgagactgattac
ttgaggggagtcactgaaaacataatgttaggtcagctcgcccccattggcactggtgaa
tgtgccttgtatcttaatgatgagatgctgaaaaatgccattgagctccaattgcctagt
tatatggatggtcttgattttggtatgactcctgctcgctccccaatatctggaactcca
tatcatgaaggcctgatgtctcccagttatttgttgagccccaatttacggctgtctcca
actactgatgcacagttttcaccttatgttggtgggatggcattttctcctacttcatct
cctggttacagcccatcatccccaggctatagtccctcatcacccgggtacagccccact
tcacctgggtacagccccacttcacccgggtacagccccacctctccgacttatagtcct
agctctccgggatatagtcctacaagtccagcttattcgcccaccagtccatcctactct
cccacatcaccgagctacagccccacatcacccagctacagtcccacatcacccagctac
agccctacctctcccagctatagcccaacttcaccagcttacagccccacttcacctgct
tacagccctacttcaccagcatatagccccacatctccttcctatagtccgacttcacct
tcttatagtccaacttcaccttcctacagccctacatcaccctcttacagtccgacgtct
ccatcatatagtcctacatcacctgcttacagccccacatcacctggatacagcccaacc
tcgccatcgtatagccctacctcaccatcatatagccctacgtcccctagttacaatccg
cagtcagcaaagtatagtccttcgttagcatattctccaagcagtccgagattgtctcca
tcaagtccatatagtcccacatcaccaaattatagtccgacatcaccatcatattcacca
acatctccatcttattctccatcaagcccaacatacagtcccagcagcccatataattct
ggtgtgagcccagactatagccccagttcgccccaatttagtcccagtacgggttactca
ccaagtcaacctggttactcgccatcgtcgaccagccagtacactccacaaactagtgac
aaggatgatagaggcactcgctga
DBGET
integrated database retrieval system
