Galdieria sulphuraria: Gasu_56980
Help
Entry
Gasu_56980 CDS
T02926
Name
(RefSeq) pre-mRNA cleavage complex II protein Clp1-like protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
gsl
Galdieria sulphuraria
Pathway
gsl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Gasu_56980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsl03019
]
Gasu_56980
Enzymes [BR:
gsl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
Gasu_56980
Messenger RNA biogenesis [BR:
gsl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
Gasu_56980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
AAA_21
ABC_tran
nSTAND3
Pirin_C_2
SRPRB
AAA_15
Motif
Other DBs
NCBI-GeneID:
17085650
NCBI-ProteinID:
XP_005703212
UniProt:
M2X9Y8
LinkDB
All DBs
Position
Unknown
AA seq
418 aa
AA seq
DB search
MLNQDEKRTFRLEKEQELRFEVSNENKVYLTLQSGTAEVFGIELPKKKPVELCDTKLAVF
TWQGCELQLQGITDLEYVANETPMHLYLKAHYLLDSMRRKARQQGTKGPKVVIVGPQDSG
KSSLCQILSCYAMKGGKKILYASIDFQQGSFSIPGAIGASSVEHATIEDGMIFENNLVYF
YGHTVASENPRLLEKLVSNLSNLLDAKLEDSEMDLGHMGFIADSFGSLDGSNYDVLKQVL
KEIKANVIIVLGSERLYADIQRDLCSEQRQIIQLPKSGGVVGRDQYLRRRLQEMQLRCYF
YGSDGNLNPFTTVVTFDQVHIVRVGIGLHVPATALPLGAQSTLDPLQISQVTPSTELLHC
MLGVSQAEEEEQIVDSPVYGFVHVAKVDISKRTISLLAPSPGKLPGSFLVMGSIRWLE
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgttaaatcaggatgagaagcgaacttttcgtttagagaaggaacaagagttgagattt
gaagtttccaatgaaaacaaagtctatctcactcttcaatcaggcacagcagaggtattt
ggtattgagcttccaaaaaagaagcctgtagagctctgcgataccaaacttgcagtcttt
acttggcaaggttgtgagttacaacttcaaggcataaccgacttggaatatgttgccaac
gaaacacctatgcacctttatctcaaggcacactatcttcttgactctatgcgtcgaaaa
gctagacagcaggggactaaagggcccaaggtagtgatagtcggtccacaggattctggt
aaaagttccctttgtcaaattctctcttgttatgctatgaaaggaggcaagaaaatattg
tatgcaagtattgactttcaacaaggctccttctctattcctggagctattggagcatcc
tctgtggaacatgccacaatagaagatggtatgatatttgaaaacaaccttgtctatttc
tatggtcatacagtagcttccgagaacccgagacttttggaaaaattagtcagcaatctt
tcgaacttgttggatgccaagttggaagactctgaaatggatctgggtcatatgggcttt
attgcagactcctttggcagtttggatggaagcaactatgatgttctcaaacaagtattg
aaggaaatcaaagccaatgttatcattgtattgggttcggaaaggctttatgccgatatt
caaagggacctatgttcagaacagagacaaattattcagctcccgaaatctggtggagtt
gtaggcagagatcaatacttgagacggcgacttcaggaaatgcagcttcgttgttatttc
tatggctcagatggaaatctcaatcctttcacaactgtggttacttttgaccaagttcat
atagtgcgcgttggtatcggacttcatgtgccagcaacagctttgccacttggagcacag
tctactttggatccgttgcaaatttcgcaagtgactccttccactgagttacttcattgt
atgttgggagtcagtcaagctgaggaagaagaacaaattgtggactctccagtatatggt
tttgttcatgttgccaaagtggatatctcgaaaagaacaatctctttgttggcaccatct
ccaggaaaactacctggaagctttctagtgatgggatccattcgttggctcgagtag
DBGET
integrated database retrieval system
