Geomonas subterranea: KP001_13120
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Entry
KP001_13120 CDS
T07936
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
gsub
Geomonas subterranea
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gsub03009
]
KP001_13120 (rimO)
Enzymes [BR:
gsub01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
KP001_13120 (rimO)
Ribosome biogenesis [BR:
gsub03009
]
Prokaryotic type
ribosomal protein modification factors
KP001_13120 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
QXE89394
LinkDB
All DBs
Position
3018607..3019953
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AA seq
448 aa
AA seq
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MNQKIKEKVSLVSLGCPKNLVDAEVMLGYLSKDEYEVTTDEMQADIIVVNTCSFIKEAKQ
ESIDTILDLADRKHDARCKLLIVTGCLPQRYQEELAKELPEVDIFIGTGDYPRIAEILQE
KKGTDAQLCYTGDPNFVYNDELPRLQSSPHYTAYLKIAEGCSNNCSYCVIPSLRGAHRSR
PFATLMAEARSLVAAGVKELNLIAQDITAYGRDLPEQPSLELLVQELAKLEDLKWIRLLY
AYPDGVRDSLIELIKNEPKVCKYLDLPIQHISDPVLKNMKRRSGEADIRALIAKLRREIP
DIAIRTSLIVGFPGETNEDFKTLLQFVEETRFDRLGVFCYSREEGTPAAEMPDQVSERVK
RERHKKLMRTQARVSFKHNRTLVDSEEDVLVEGYSEETELLLKGRSSRQAPDVDGQVYIT
AGNANVGDIVRLKITDSSDYDLIGEIIE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
ttgaaccagaagattaaggaaaaagtgagcctggtgagcctgggctgcccgaagaacctg
gtggacgccgaggtgatgctgggctacctctccaaggacgagtacgaggtcaccaccgac
gagatgcaggcggacatcatcgtggtgaacacctgctccttcatcaaggaggccaagcag
gagagcatcgacaccatcctcgacctggccgacagaaagcacgacgcgcgctgcaagctg
ctcatcgtgaccggctgcctgccgcagcgctaccaggaggaactcgccaaggaactcccc
gaggtggatatcttcatcggcaccggagactacccgcgcatcgcggagatcctccaggag
aagaaggggaccgacgcccagctctgctacaccggcgaccccaacttcgtctacaacgac
gagctgccgcgcctgcagtcctcgccgcactacaccgcgtatctaaagatcgcggagggg
tgctccaacaactgctcctactgcgtgatcccgtccctgcgcggcgcgcaccgctcccgc
cccttcgcgacgctgatggccgaggccaggtccctggtggccgccggggtgaaggagctc
aacctgatcgcccaggacatcaccgcctacggccgcgaccttcccgaacagccgagcctc
gagctcctggtccaggaactggccaagctggaagatctcaaatggatcaggctcctctac
gcctacccggacggggtcagggactccctgatcgagctgatcaagaacgagcccaaggtg
tgcaagtacctggacctccccatccagcacatctccgacccggtcctgaagaacatgaag
cgtagaagcggcgaggccgacatccgcgcccttatcgccaagctgcgccgcgagatccct
gacatcgccatccgcacctcgctcatcgtcggcttccccggcgagaccaacgaggacttc
aagacgctcctgcaattcgtcgaggagacccgcttcgaccgtctcggcgtgttctgctac
tcccgcgaggaggggaccccggcggccgagatgccggaccaggtttccgagcgggtcaag
cgcgagcgccacaagaagctgatgcgcacccaggcccgggtctccttcaagcacaacaga
accctcgttgacagcgaggaggatgtgctggtcgaggggtacagcgaggagaccgagctc
cttttgaagggacgctcctcacgccaggcccccgatgtggacggtcaagtgtacatcacc
gcgggcaacgccaacgtaggtgacatagtacgattgaagatcactgactcctctgattac
gaccttattggcgagatcatagagtag
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