Geobacillus thermodenitrificans: GTNG_1112
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Entry
GTNG_1112 CDS
T00496
Name
(GenBank) DNA polymerase III alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
gtn
Geobacillus thermodenitrificans
Pathway
gtn03030
DNA replication
gtn03430
Mismatch repair
gtn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gtn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GTNG_1112
03430 Mismatch repair
GTNG_1112
03440 Homologous recombination
GTNG_1112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gtn03032
]
GTNG_1112
03400 DNA repair and recombination proteins [BR:
gtn03400
]
GTNG_1112
Enzymes [BR:
gtn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GTNG_1112
DNA replication proteins [BR:
gtn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GTNG_1112
DNA repair and recombination proteins [BR:
gtn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GTNG_1112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
HHH_3
DEDDh_C
DNA_pol_A_exo1
RNase_H_2
DUF1409
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ABO66486
UniProt:
A4IMD2
LinkDB
All DBs
Position
1172809..1177137
Genome browser
AA seq
1442 aa
AA seq
DB search
MISLRGEVMVTKEQKERFLVLLEQLKMTSDEWMPYFREAAIRKVVIDKEEKSWHFHFQLA
NVLPVDVYKSFTDRLAAAFRHIAAVRHTIYVEAPHVTETDVQAYWPLCLEQLQEGVSPLV
DLLSRQTPVVKGNKLFVTARHEAEALAVKRRFAKKIADVYASFGFPLLHLEVGIQPAEQE
MERFLAQKQQEDEERALAVLTDLAKEEEKAEAASPSGPLVIGYPIRDEEPVRPLETIVEE
ERRVVVQGYVFDAEVTELKSGRTLLTMKITDYTNSIVIKMFSRDKEDAALMSSVKKGMWV
KVRGSVQNDTFVRDLVIIANDLNEVAANERRDTAPEGEKRVELHLHTPMSQMDAVTSVAK
LIEQAKKWGHPAVAITDHAVVQSFPEAYSAAKKHGMKVLYGMEANIVDDGVPIAYNEAHR
RLSDETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPHHPLSVTTMELTG
ITDEMVKDAPDVEEVLRRFIDWVGDSTLAAHNASFDIGFLNAGLAKMGLGKVINPVIDTL
ELARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLLKEAEERGILYHDE
LNSRTHSEASYRLSRPFHVTLLAQNETGLKNLFKLVSLSHVQYFHRVPRIPRSVLVKHRD
GLLVGSGCDKGELFDNLIQKAPEEVEEIARFYDFLEVHPPAVYKPLIEMDYVKDEEMIKD
IIRSIVALGEKLDIPVVATGNVHYLNPEDKIYRKILIHSQGGANPLNRHELPDVYFRTTD
EMLDCFSFLGAEKAKEIVVDNTQKIASLIGEVKPIKDDLYTPRIEGADDEIREMSYRRAK
DIYGDPLPKIVEERLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVGSRGSVGSSFVA
TMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPQCGTKYKKDGHDIPFET
FLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFVKGYAS
DHNLELRGAEIDRLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFTPIQYPADDTSSEWRT
THFDFHSIHDNLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPDVMGIFSSTEPLGVT
PEQIMCNVGTIGIPEFGTRFVRQMLEETKPKTFSELVQISGLSHGTDVWLGNAQELIQNG
TCTLSEVIGCRDDIMVYLIYRGLEPSLAFKIMESVRKGKGLTPEFEEEMRKHDVPEWYID
SCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIR
KRIEEINAKGIQATAKEKSLLTVLEVALEMCERGFTFKNIDLYRSQATEFVIDGHSLIPP
FNAIPGLGTNVAQNIVRAREEGEFLSKEDLQQRGKVSKTLLEYLESRGCLDSLPDHNQLS
LF
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgatttcgttgagaggggaagtcatggttacgaaagaacaaaaagagcggtttctcgta
ttgctcgagcagctgaagatgacgtcggatgaatggatgccgtactttcgagaggcggcc
attcggaaagtcgtgattgataaagaggaaaaaagctggcattttcattttcaattggcg
aacgtgctgccggttgatgtgtacaagtcgtttacggaccgattggcagccgcattccgt
catatcgctgctgtccgtcatacgatttatgtcgaagcgccgcatgtgaccgaaacggat
gtgcaggcgtattggccgctttgccttgaacagctgcaagaaggcgtgtcgccgctcgtc
gatttgcttagccggcagacgccggtggtgaaaggaaacaagctctttgtcaccgcccgt
catgaggcagaagcgttggccgtcaagcggcgattcgccaaaaaaatcgcggatgtctac
gcttcgtttgggttcccgctccttcacctcgaagtcggcattcaaccggccgagcaggaa
atggagcggtttttggcgcaaaaacagcaagaagatgaagaacgagcgctcgccgtgctg
acggatttggcgaaagaagaagaaaaagcggaagcggcttctccgtccggcccgcttgtc
atcggctatccgatccgcgacgaggagccggtgcgtccgcttgagacgatcgtcgaggaa
gagcgacgtgtcgttgtgcaagggtatgtgtttgacgctgaagtgaccgaactcaaaagt
ggccgtacgctgctgacgatgaaaatcacggattatacgaactctattgtcatcaaaatg
ttctcgcgtgacaaagaagacgctgcactgatgtccagcgtgaaaaaaggcatgtgggtg
aaagtgcgcggcagtgtgcaaaacgatacgttcgtccgcgatttagtcattatcgctaat
gacttaaacgaagtagcggcgaacgaacggcgcgatacggcaccggaaggcgaaaaacgg
gtcgaactccatttacacacaccgatgagccaaatggatgcggtcacttcggtggcgaag
ctcattgaacaggcgaaaaaatgggggcacccggcggtggccatcaccgaccatgccgtc
gttcaatcgtttccggaagcgtatagtgcggcgaaaaaacacggcatgaaagtgttgtat
gggatggaagcgaacatcgttgatgacggggtgccgatcgcctacaacgaggcgcaccgt
cgcctttccgacgagacgtatgttgtctttgacgtcgaaacgaccggattgtcggctgta
tacaacacgatcatcgagttggcggcggtgaaagtcaaagacggtgaaatcatcgatcgg
tttatgtcgtttgccaatccgcaccatccgttatcggtgacgacgatggaattgacgggc
attaccgatgagatggtgaaagacgccccggatgtcgaagaggtgcttcgccgctttatc
gattgggtcggtgactcaacgcttgccgctcataacgctagctttgacatcggcttttta
aacgcagggctcgccaaaatggggcttggcaaagtcataaacccggtcatcgatacactt
gaactcgcccgttttttatatccggatttgaaaaaccatcgtctcaatacgctttgtaaa
aagtttgacattgaattgacacaacaccaccgcgccatttatgacgccgaggcgaccggg
catttgctgatgcggctgctgaaagaagcagaggaacgaggcattttgtatcacgatgag
ttgaacagccgcacgcatagcgaagcatcatatcggctatcgcgcccgtttcatgtgacg
ttattggctcaaaacgagacggggttgaaaaatttgtttaagctcgtttcgctgtcacac
gttcaatattttcaccgtgtgccgcgcattccgcgctcggtgcttgttaagcatcgcgat
ggcttgcttgtcggttcaggttgcgacaaaggggagctgtttgacaacttgatccaaaag
gcgccggaggaagtggaagagatcgcccgtttttacgatttccttgaggtgcatccgcca
gcggtatacaagccgctgattgagatggactatgtcaaagatgaggaaatgatcaaagat
attattcgcagcatcgtcgccctcggcgagaagcttgatatcccggttgtcgccaccggc
aacgttcattacttgaatccggaagataaaatttaccggaaaattttaattcactcgcaa
ggtggagcgaacccgctcaaccggcacgagctgccggacgtgtatttccgcacaacggat
gaaatgcttgactgtttttcgtttttaggggcggaaaaagcgaaagaaatcgtcgtcgac
aatacacaaaaaatcgcctcgttaatcggcgaggtgaagccgattaaagacgatttgtat
acgccgcgcatcgagggagcggacgacgaaatccgggaaatgagctatcggcgcgcgaaa
gacatttatggcgatccgctgccgaagatcgtcgaagagcggctcgaaaaagagttgaaa
agcatcatcggccacggttttgctgttatttatttaatttctcataaactggtgaaaaaa
tcgcttgatgacggctatctcgtcggttcgcgtgggtcggtcggatcgtcgtttgtcgcg
acgatgacggaaattaccgaagtgaacccgctgccgccgcattacgtctgcccgaactgc
aaacactccgaattttttaatgacggctcagtcggctcgggctttgacttgccggataaa
aactgcccgcaatgtgggacgaagtacaaaaaagacgggcacgacatcccgtttgagacg
ttcctcggctttaagggcgacaaagtaccagatattgacttgaacttctcgggtgagtac
cagccgcgagcccacaactatacgaaagtgttgtttggtgaagacaatgtctatcgagcc
gggacgattggcacagttgctgacaaaacggcatacggatttgtcaaaggctatgcgagc
gaccataacttagagctgcgcggcgcagaaatcgaccggcttgcggccggctgcaccggg
gtgaaacggacgaccgggcagcatccgggcggcattattgtcgttccagattacatggaa
atttatgactttacgccgattcaatatccagccgatgacacgtcatcagagtggcgaaca
acccactttgactttcattcgattcacgataacttgttgaagttagacattcttgggcac
gatgatccgacggtcattcgcatgttgcaagatttaagcggtattgatccgaagaccatt
ccgaccgacgacccggatgtgatgggtattttcagcagcactgagccgcttggcgtcacg
ccggagcaaattatgtgtaacgtcggcacgattggtattccggagtttggcacgcgcttt
gttcgacaaatgttggaagaaacgaaaccaaaaacgttttccgagctcgtgcaaatttcc
ggtttgtcgcacggcaccgatgtctggctcggcaatgcacaagagctcatccaaaacggg
acgtgcacgttgtcggaagtgatcggctgccgcgacgacattatggtatatctcatttat
cgcgggcttgaaccgtcgctggcgtttaaaattatggaatcggtgcgcaaggggaaaggg
ttgacgccggaatttgaagaagaaatgcgcaagcatgacgtaccggagtggtacatcgat
tcgtgcaaaaaaatcaaatacatgttcccgaaagcgcacgccgccgcctacgttctcatg
gcggtgcgcatcgcctatttcaaagtgcaccatccgctcttgtattacgcgtcatacttt
acggtgcgggcggaagatttcgatcttgatgccatgatcaaaggctcagccgccatccgt
aagcggattgaggaaattaatgccaaaggcatccaggccaccgcgaaggagaagagcttg
ctcactgtgcttgaagtagcgctagaaatgtgcgagcgcggctttacctttaaaaatatt
gacttgtatcgttcgcaggcgaccgaatttgtcattgatggccattcactcattccgccg
tttaatgccatcccggggctcgggacgaacgtggcacaaaacattgtgcgcgcccgcgaa
gaaggggagtttttgtcgaaagaagatttgcagcagcgtgggaaagtatcgaaaacactt
cttgagtatctcgaaagtcgtggttgcctcgactcacttccggatcataaccaactgtct
ctgttctga
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