Gardnerella vaginalis 409-05: HMPREF0424_1059
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Entry
HMPREF0424_1059 CDS
T01146
Name
(GenBank) pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
KO
K06215
pyridoxal 5'-phosphate synthase pdxS subunit [EC:
4.3.3.6
]
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva00750
Vitamin B6 metabolism
gva01100
Metabolic pathways
gva01240
Biosynthesis of cofactors
Module
gva_M00916
Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00750 Vitamin B6 metabolism
HMPREF0424_1059
Enzymes [BR:
gva01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.3 Amine-lyases
4.3.3.6 pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
HMPREF0424_1059
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GFIT
Motif
Pfam:
SOR_SNZ
ThiG
NMO
Dus
His_biosynth
NanE
TetR_C_27
IGPS
DUF188
DHO_dh
Motif
Other DBs
NCBI-ProteinID:
ADB14189
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Position
1206708..1207646
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AA seq
312 aa
AA seq
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MMAENLNTTVTVNESSDPQNKSGEDRTALNRQLAQMLKGGVIMDVTTPEQARIAEDSGAC
AVMALERIPADIRAAGGVSRMSDPAMIHSIQEAVSIPVMAKCRIGHFVEAQVLEAIEIDY
IDESEVLSPADDVYHINKRDFAVPFVCGAKDLGEALRRINEGASMIRTKGEPGTGDVIQA
VRHMRMMNSAIRKLTSMREDELFEEAKNLRVPFELVKYVAQNGKLPVVNFAAGGVATPAD
AALMMQLGAEGVFVGSGIFKSGDPAKRAAAIVKAVTNYKDAKMIAKLSENLGEAMVGINE
QEIKLLMAERGE
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgatggctgagaacttgaatactacggtaactgtgaacgaatcctcggatccgcaaaac
aaaagcggcgaagaccgtacagcattgaaccgtcaactggcacaaatgcttaaaggcggc
gtgattatggacgtcaccaccccagagcaggcacgaattgctgaagattctggcgcatgc
gcagttatggctttggagcgtattcctgccgatattcgtgcagcaggcggcgtttctcgt
atgagcgacccggctatgattcacagcattcaagaggctgtgtctattcctgttatggca
aaatgccgtatcggtcactttgttgaagcacaagtgcttgaggctatcgagatcgactac
atcgacgaaagcgaagtgctttctccagccgacgacgtgtatcacatcaataagcgcgat
tttgctgtgcctttcgtttgcggcgctaaggatttgggtgaagctttgcgcagaatcaac
gaaggcgcttccatgattcgcactaagggcgagcctggaactggtgacgtgattcaagct
gtgcgtcacatgcgtatgatgaattccgcaattcgtaagcttacaagcatgcgcgaggat
gagctttttgaagaagccaaaaatttgcgcgtgcctttcgaactcgtaaaatacgttgca
caaaacggcaagctccctgttgttaacttcgcagccggcggcgttgctaccccagccgac
gctgctttaatgatgcagcttggtgccgaaggcgtattcgttggctccggtatctttaag
tctggagacccggcaaagcgtgctgcagcaatcgttaaagctgtaactaattacaaggac
gccaagatgattgctaagctttccgaaaacttgggcgaagctatggttggcattaacgag
caggaaatcaagcttttaatggctgagcgaggcgagtaa
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