Haliovirga abyssi: HLVA_05580
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Entry
HLVA_05580 CDS
T09313
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
haby
Haliovirga abyssi
Brite
KEGG Orthology (KO) [BR:
haby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
haby03009
]
HLVA_05580 (rimO)
Enzymes [BR:
haby01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
HLVA_05580 (rimO)
Ribosome biogenesis [BR:
haby03009
]
Prokaryotic type
ribosomal protein modification factors
HLVA_05580 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
TMF_TATA_bd
DUF1248
NAGidase
DUF1678
Motif
Other DBs
NCBI-ProteinID:
BDU49989
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Position
663692..665035
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AA seq
447 aa
AA seq
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MKLALVSLGCHKNLVDSENLIGILSKRKDVEIISNIEEADVAIVNTCGFIGDAKEESIET
IIEVGELKETGNLKKLIVAGCLAQRYSEDLMEELSEIDGIIGTGEIDKIEEVLDEVIDGK
KIIKSESLDFLANSETERVITTMPHTAYIKIAEGCDNRCAFCIIPYLRGKYRSRTIEDII
KEIENLVSNGVREVNIIAQDTTEYGIDIYGKRRLADLLREIAKVEELERIRVFYTYPSNF
DDELIKVIKEEDKICKYIDIPIQHVSDKILTSMRRRGTAKEMKELLYKIRREIPEAVFRT
SLIVGFPGETEEEFEELKDFVEEFKFNYAGIFNFSREEDTPAFDLENQIDDDTRHKRWVE
LTNIQSKIAENINRKYIGEVVEVIIDGVSEESEYMLEGRTCGQAPEIDGKVLINDGTGER
GEIVKVKIEQNFDYDLLGGIIENEFTK
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaaattagctttagtaagtttaggatgtcataaaaatttagtagatagtgagaattta
attgggatattatcaaaacgaaaagatgttgagataatatctaatatagaagaagctgat
gtagctatagtgaatacttgtggatttataggagatgcaaaagaagaatctatagagaca
ataatagaagttggagaattaaaagaaactggtaatttaaaaaaactaattgtggctgga
tgtttagcacagagatattcagaggatttgatggaagaattatcagaaatagatggaata
ataggaacaggtgaaatagataaaatagaagaagttttagatgaagtgattgatgggaag
aaaataatcaaaagtgaaagtttagattttctagctaatagtgaaacagaaagagtcatt
acaactatgccacatacagcatatataaaaattgctgaagggtgcgataatagatgtgct
ttttgtataataccttatttaagaggaaaatatagaagtagaacaatagaagatataatt
aaagaaatagaaaatttagtatcaaacggagtaagagaagtgaatattatagcccaggat
actacagaatatggaattgatatatatggaaaaagaagattagcagaccttttaagagaa
attgcaaaagtggaggaattggaaagaataagagttttttatacatatcctagtaatttt
gatgacgaattaattaaagttattaaagaagaagataaaatatgtaaatatatagatatt
cctattcaacatgtgtcagataaaatattgacatctatgagaagaagagggactgcaaaa
gagatgaaagaactactttataaaataagaagagaaataccagaagcagtctttagaaca
tctttaattgttggatttcctggagaaactgaagaagaatttgaagagttaaaagatttt
gtagaagaatttaaatttaattatgcaggaatatttaatttttcaagagaagaagacaca
cctgcttttgatttagaaaatcaaatagatgatgatacaagacacaagagatgggtagag
cttaccaatatacaaagtaaaatagcagaaaatataaatagaaaatatataggagaagtt
gtagaagtaataatagatggcgtatctgaagaatcagagtatatgttagaaggtagaact
tgtggacaagctccagaaatagatggaaaagttttgattaatgatggaactggagaaaga
ggagaaattgtaaaagttaaaattgaacaaaattttgattatgatttattaggagggata
atagaaaatgaatttaccaaataa
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