Halomicrobium sp. LC1Hm: LC1Hm_4111
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Entry
LC1Hm_4111 CDS
T06261
Symbol
fdfT
Name
(GenBank) Phytoene/squalene synthetase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
hall
Halomicrobium sp. LC1Hm
Pathway
hall00100
Steroid biosynthesis
hall00909
Sesquiterpenoid and triterpenoid biosynthesis
hall01100
Metabolic pathways
hall01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
LC1Hm_4111 (fdfT)
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
LC1Hm_4111 (fdfT)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
hall01006
]
LC1Hm_4111 (fdfT)
Enzymes [BR:
hall01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
LC1Hm_4111 (fdfT)
Prenyltransferases [BR:
hall01006
]
Terpene biosynthesis
Squalene/phytoene synthase
LC1Hm_4111 (fdfT)
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
QGA84443
UniProt:
A0A5Q0URW4
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All DBs
Position
pLC1Hm-01:143914..144981
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AA seq
355 aa
AA seq
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MTHHHTGPSESPLAYCHEAVQGVSRTFALTIDALDSPLADQICVGYLLCRIPDTVEDANH
VPAAAQQDLLGTYREVLQPGSSTSIESFTRQAREWMPAQNPSPDWELVGNAPTVMAAFEQ
FDPPTREAMLPPVREMTTGMARFVERYADEPGIRIQTGTELRSYCHYVAGTVGTLITNLL
AEQSLSEARETALRHNGEHFGRLLQLVNIAKDVHDDYVAENNVYLPAEWLAAEGVPQDRV
VDDDLRSEAVAVLSRTLDRARQHLDPAQSYIEEMPLGGGNTVVAWAVPYLLAVGTLRELR
ANPGAAFAAEAVKVSRKEVRTIVSAVSATDRQRLDLLRETVAASPLEAVPQPLSH
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgacccaccaccacaccggtccgtccgagtcccccctcgcgtactgtcacgaggctgtc
cagggcgtctcgcgaacgttcgcactaacgatcgacgcgctcgactcgccgctggccgac
cagatctgtgtcggctacctgctctgtcggattccggacacggtcgaggacgcgaaccac
gtcccggcggcggcacagcaggacctcctggggacgtatcgcgaggtcctccagcccggt
tcgtcgacgtcgatcgagtcgttcactcggcaggcccgagagtggatgccggcccagaat
ccctcaccggactgggaactcgtcgggaacgcaccgaccgtgatggcggcattcgagcag
ttcgacccacccacgcgggaggcgatgctgccgccggtccgcgagatgaccacgggaatg
gcccggttcgtcgagcggtacgccgacgagccggggattcgcatccagacgggcaccgag
ctacggagctactgtcactacgtcgcgggcaccgtcgggaccctgatcacgaacctcctc
gcagagcagtccctctccgaggctcgggagacggcgctgcggcacaacggcgaacacttc
ggccggctcctccagctggtgaacatcgcgaaggacgtacacgacgactacgtcgccgag
aacaacgtgtacctccccgcggagtggctggccgccgagggagtgccacaggatcgggtc
gtcgacgacgacctccgctcggaggccgtcgcggtgctgtcacggacactcgaccgggca
cggcagcacctcgatcccgcccagtcgtacatcgaggagatgccactgggcggcgggaac
accgtcgtcgcgtgggccgtgccgtacctgctggcggtcgggacgctgcgagaactgcgc
gcgaaccccggagcggcgttcgccgcggaggcggtgaaggtgtctcggaaagaggtgcga
acgatcgtgagcgcggtgtcggcgaccgatcgccagcggctcgatctgctgcgcgagacg
gttgctgcgagcccgctcgaagcggtcccccagccactctctcactga
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