Helianthus annuus (common sunflower): 110884713
Help
Entry
110884713 CDS
T05101
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110884713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
han03021
]
110884713
Enzymes [BR:
han01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110884713
Transcription machinery [BR:
han03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
110884713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
110884713
NCBI-ProteinID:
XP_021988121
LinkDB
All DBs
Position
10:61924172..61937521
Genome browser
AA seq
1681 aa
AA seq
DB search
MSTTEGASDMVEGVSFSFMTDEEVRKHSVLKVTNPILLDPVGRPMLGGLYDPLLGPIDDQ
APCKSCGQQSFNCPGHCGHIDLVSPVYNPLLFDMLYTILRQTCFFCRHFKARREEVEVCT
TKLTMIAQGDVTGAKNYVSVSDSKDIDMEESDGNNVSSSGSQSDGPAQTHNDFWTSVQYI
EAKSVLKDFLSKPSKSCHSCECKNPKITKPTFGSFRMEMSVKDAEKNHIKGYQLGSSRDE
EELLEDEDDKISEVINVNEQSEEDRVDTAGTGASAASSSKRKNVKKKKSKVPLDFMELKK
RYSGSLLPSRVISIIKDLWENEAGLCSFICDMQQLNGSVKSNYSMFFIKALLVPPTKFRP
AAVAGDSVMENPQTVLLGKVVQSNDALGKAHISKLEGSKIADRWKDLQQSVNVLFDSKTA
TNLTLKSANTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGVPPYFALR
LTYPERVTPWNAGKLKDAIINGSNIHPGATHYADKVSTVRLPQSKKMRISISRKLPSSRG
TGIQTKKSSDYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA
NCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANNQYIVPTRGDTVRGLIQDHIVSSVL
LTMKDTFLDREDFNQLLYTSGVFAGGGSSQHGKVSIVDKACHVEPVFPAVLKPKPLWTGK
QVITAILNHLTRGYKPCIVDNKVKIPEQYFQGKEVKQDKNKTNKRLKKELAEFDNANLKE
ADETRLLIWKNELVCGVIDKAQFGKYGLVHTVQELYGPDIAGLLLGAFSRLFTSFLQFHG
FTCGLDDLMVAPDCDKEMRMELEGEDVGEKVHRKFVNLENQKIGTRELQLETEKIIRSNG
VTATASLDNLMQTELRDKGSMISKKWLPKGLLKPFPQNCISLMTISGAKGSSVNFQQISF
LLGQQELEGKRVPRMVSGKTLPSFSPWDFTSRAGGYIVDRFLTGLRPQEYYFHCMAGREG
LVDTAVKTSRSGYLQRCLIKNLESLKVSYDHTVRDADGSIVQFYYGEDGVDVHQTSFLSN
LQVLKSNQEIINQKLKEPLEFNSYIQELPQGVKDKVKSFKHRNENREDLLMLIRQKYLSS
LAHPGEPVGVIAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAPNIKTPM
ITCPLLQGRSMEDAERLVEKVKKLSVAEVMQSIEVSKLPLVLINNQPCRVYKLIVKLKKP
KHVSLQNCQETLRNIFLRALEDTIERHIALLSRINGIKSVKNSKSDGAGDDDSGSNLDRD
DGHEDDQEDDDDDDNEKDETADDLGADYNKRKRQNTDSVEYESSEEEDEDGEEEEEEKEA
SSDLENDGVEGKDDGKTGKEVESESESDDETNGGGLAKEQEQEDKDMDKAKLKPNEEFVT
RKFDRSTFVEVKDLSLEVHFRFTNEPEILLAEVVQKAAKKVYIKGSGKLDQCQPVKYSVN
VKQVCWNQNHPAIKKMNEKVKNNDNKKEENKHVPCALQASGVELPAFWDMEQDLDVDHVY
SNNIHTMLNTYGVEAARTSIIMEMQNVFGSYGVEIDYRHLSLIADYMTHSGGYRPMSRFG
SISESVSPFHKMSFETASKFIVEAASHSMMDNLETPTARICLGLPVKVGTGSMELMQKLD
L
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccactgagggtgcatcggatatggtggagggtgtaagtttcagtttcatgact
gatgaagaggttaggaagcacagtgttttaaaggttacaaaccctattttacttgaccct
gttggaagaccaatgctaggaggtttgtatgatcctttgttgggccccattgatgatcaa
gcaccatgtaagtcgtgtgggcagcaatcgtttaactgcccgggtcattgtggtcacatt
gatcttgtttcaccagtatacaacccgttattgtttgatatgctttacaccattttaaga
caaacctgtttcttttgtcgccattttaaggcacgcagagaagaggtcgaagtgtgtact
actaaactaacgatgatagcacaaggtgacgttaccggtgccaaaaattacgtcagtgtt
tccgatagcaaagatattgatatggaggagagtgatggtaacaatgtttcaagttctggt
tcacaaagtgacgggcccgcacaaactcataacgatttttggacatcggttcagtatata
gaagcaaaatctgttttgaaagacttcttgagtaaacccagcaagtcttgccatagctgt
gaatgtaaaaacccgaagatcaccaaaccaacgtttggatcgtttcgtatggaaatgagt
gttaaagatgcggagaagaatcatataaaaggttatcagctgggaagtagtcgggacgag
gaagagcttctagaagatgaagacgacaagatttctgaggtcataaacgtcaacgaacaa
tcagaagaagatagagttgacacagctgggaccggtgcatctgcagcctcatcgtccaaa
cgaaagaacgtaaaaaagaaaaagtcaaaagtgcccttggatttcatggagctgaaaaaa
agatattccggttctcttttaccatctagggttataagtataattaaagatctgtgggaa
aacgaagcgggtctttgttcatttatatgtgatatgcagcagttaaacggatctgtcaaa
agtaactattcgatgttctttataaaggcgttgcttgtaccccctacgaaatttcgtcct
gctgccgtggcaggtgattctgtgatggagaatccacaaacggtgttactaggcaaggtg
gtacagtcaaacgatgcattgggaaaggctcatatcagcaaacttgaagggtcgaagatt
gctgatcgatggaaagatttacagcagtctgtaaatgttttatttgacagcaagactgcc
acaaatttaactctgaaaagtgcaaacaccgggatatgccagttacttgagaagaaagag
ggaatatttcgccaaaaaatgatgggaaaaagagttaattatgcttgccgatctgtcatt
tcccccgatccttatttagcggttaatgagatcggagttccaccttattttgccctgaga
ttgacctaccctgagagggtgactccttggaatgctggaaaactgaaggatgcgatcatt
aacggttctaatatccatcccggagctacgcattatgctgataaggtgtcaaccgttagg
ctacctcaaagcaaaaagatgcgtatttctatatctagaaaattaccgtcctctagaggt
acgggcatacaaaccaaaaagagctccgactatgaattcgagggtaaagttgtctatcgc
cacttgcaagatggtgacattgttcttgtcaaccgtcagcctacacttcacaagccgagt
ataatggcacatgttgttcgagtattgaaaggtgagaaaacgcttcggatgcattatgca
aattgcagttcctacaatgctgattttgatggagacgaaatgaatgttcatttaccacaa
gatgaaatttcacgtgctgaagcctataacattgtgaatgctaacaatcagtatatagtt
ccaacaaggggtgatacggttagaggcttaattcaggatcatattgttagctctgtactt
ctcacgatgaaagatacgtttctagaccgtgaagatttcaatcaacttctttacacttct
ggtgtgtttgctggcggcggcagttcacaacatgggaaggtctctattgtcgataaagcg
tgccatgtggagcccgtttttccagctgttttaaaaccaaaacctctctggacagggaaa
caggtcataacagcgatactgaatcatctgacgagaggttataagccttgtattgttgat
aacaaggtgaagattccggagcaatattttcaagggaaagaggtcaaacaggataaaaat
aaaacaaataaacgtctaaaaaaagagcttgctgagtttgacaatgcgaatctaaaagag
gccgatgagaccagattattaatatggaaaaacgagcttgtgtgtggtgtcatagacaaa
gctcagtttggcaagtatggtttggttcatacggttcaagagctgtatggtccagacatt
gcagggctcttacttggagcttttagtcggttattcacttcttttctacagttccatgga
tttacatgtggattagacgacctcatggtggcgcctgattgtgacaaagaaatgaggatg
gaacttgaaggtgaagatgtaggtgaaaaggttcaccgcaaatttgtcaacctggagaac
caaaaaataggcacacgagagctgcaactggaaacagagaaaataataagaagtaatgga
gtaacagccactgcaagtttggataaccttatgcaaaccgaacttcgggataaaggttct
atgattagcaaaaagtggctaccaaaaggacttttgaaaccgttcccacaaaactgcatt
tctcttatgactattagtggtgctaagggtagttcggtgaattttcaacaaatttcattt
ttacttggtcaacaagagttggaaggaaaaagagtgccgcgaatggtttcggggaagact
ttaccgagtttttcaccttgggattttacttctcgggccggtggatatattgttgatcgg
tttttaacgggccttcgcccacaagaatactatttccattgcatggctggccgtgaaggg
ttggttgatacagctgtcaaaacttctcgtagtggatatctacaaagatgtcttataaag
aatcttgagagtttgaaagtttcatatgatcacacagttcgtgacgccgatggttccatt
gttcagttttattatggtgaagatggggtcgatgtgcatcaaactagcttccttagcaat
cttcaagtgctgaaatctaatcaagaaatcattaaccaaaagttaaaagagccacttgaa
tttaattcgtacattcaagagttgccacaaggtgttaaagataaagtcaaaagtttcaaa
cacagaaacgagaaccgagaggatttattaatgctaattcgacaaaagtatctctcaagt
cttgcccatcccggagagcccgttggtgtcatagccggtcaatctgtcggtgaaccatct
acccaaatgacgctcaacacttttcatcttgcgggacgtggtgagatgaatgtcacactt
ggtattccacgtttacaggaaattttaatgacggctgcaccaaacataaagactcctatg
ataacatgccccttgctacaaggcagatcaatggaagacgcagagagacttgtagagaaa
gtgaaaaaactgtcggttgcagaagttatgcagagtatcgaagtctcaaaactgccactt
gtacttatcaataatcaaccgtgcagagtctataagcttatagtgaaactaaaaaaaccg
aagcacgtatcgctacagaactgtcaagaaacgttaagaaacatctttttaagagcatta
gaagatacaattgaaagacacattgcgttgctttcccgaattaacggaatcaaaagcgtt
aagaattcaaaatccgatggcgccggtgacgatgattctggaagtaatctagatcgtgat
gatggtcatgaagatgatcaagaggatgatgatgatgatgataatgaaaaagatgaaacg
gctgacgatcttggcgcagattataataaacgaaaacgtcaaaatactgattcagtggaa
tacgagtcttctgaagaggaagatgaagacggagaagaagaagaagaagaaaaggaagct
tcttccgatcttgagaatgacggtgttgagggtaaagatgatggtaaaaccggtaaagaa
gttgaaagtgaaagtgaaagtgacgatgagacaaatggcgggggtttagcaaaggaacaa
gaacaagaagacaaagatatggataaagcaaagcttaaaccgaatgaggaatttgtgacc
agaaagtttgaccggtcaacgtttgtggaagttaaagatttgagtcttgaagtccatttc
aggtttacgaatgaacccgaaatattgctagcagaggttgtacagaaggctgcaaagaag
gtttacatcaagggttcaggaaaactcgaccaatgtcaacccgtaaaatacagtgtaaat
gtaaaacaagtatgttggaatcaaaaccaccctgcaataaaaaaaatgaacgaaaaagtg
aaaaacaacgataacaaaaaagaagaaaacaagcatgtaccatgtgcattacaagcttcc
ggagtagaactacccgcgttttgggatatggaacaagacctcgacgttgaccatgtttac
tccaacaatattcacaccatgctcaacacttacggagtagaagctgcaagaacgagcata
atcatggaaatgcaaaacgttttcgggagttatggtgtcgagattgattaccggcatttg
agtttaattgccgattacatgacgcattcgggcgggtatagacctatgagtagatttggg
agcatatcggaatcagtatctccgttccataaaatgtcgtttgagactgcgtctaagttc
attgttgaagcggcttcgcatagtatgatggataatttggagacaccgacggctaggatt
tgtcttggtttgccggttaaagttggtacgggttctatggagttgatgcagaagttggat
ctttag
DBGET
integrated database retrieval system
