Helicoverpa armigera (cotton bollworm): 110374908
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Entry
110374908 CDS
T05609
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
haw
Helicoverpa armigera (cotton bollworm)
Pathway
haw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
haw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110374908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haw03021
]
110374908
Enzymes [BR:
haw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110374908
Transcription machinery [BR:
haw03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
110374908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
SURF2
Nop14
Motif
Other DBs
NCBI-GeneID:
110374908
NCBI-ProteinID:
XP_021188497
EnsemblRapid:
LOC110374908
LinkDB
All DBs
Position
8:complement(join(10908500..10909324,10909591..10913745))
Genome browser
AA seq
1659 aa
AA seq
DB search
MSFKSTYAASTSGLTSVDPEYVQFLMFSDEDVRKLSVTKITNVQSFDAIGNPTKGGLYDS
ALGPLRDRNETCGTCNNVLLHCPGHFGHIELPLVVVNPMFIKNIYSLFRVSCLKCFKIQM
DDRLKFILKLQLELVDAGHITAALDLDNYVGDITSGKENSPDKPNKVIRKYQKLLKKRDA
VVETFQNKNVDKLRAKFINQYFRVINTAKKCAYCACKLIKVTTSENKIMYNLSADGAEKG
SKGIKILMPDEIKRYCTSIAQNDEDILKYCFPVLKYSPTQPVTNAFFMDVVPVLPPNVRP
CNVLRGELVEHPQTNVYKAILQNAFAARAVLHVLSSSDQQKTIDSLDQLPRQAYEAVQGK
TAAEKLHTVWQELQKSINNLLNCEGQGLASQGLKQIIEKKTGLIRMHMMGKRVNFAARSV
ITPDPNVDIDEIGIPDAFAMKLTYPIPVTEWNVDELRKMVINGPNKHPGAEKIEMENGRV
ISIAADSIQKRKSLAKRLLTPDEFKASGLKVVHRHLVNGDVLILNRQPSLHKPSMMAHRA
RILKGEKTLRLHYANCKSYNADFDGDEMNAHFPQNEIARSEAYNIMSVTKQYLVPKDGTP
LSGLIQDHVISGVRMSLRGTFFTKSDYQQLVFQALPNHRGPIKLLPPTILKPLVLWSGKQ
VLSTIIINTTPKGKPCLTLIGKAKISSKAWQKTPPRPWKAGGTPFNNPNTMTEAEVVIRK
GELLSGVLDKTHYGATPYGLVHCMYELYGGDSSSALLSSFSKVFTFYLQWIGFTLGVKDI
LVVEEADKKRDDYICLVRNAGKAAAVKATDLPADVDDEKLKETIEILHTKDPKFRTNLDR
QYKTMLDSYTNNINTACLSEGLLEKFPYNNLQLMVQSGAKGSTVNTMQISCLLGQIELEG
KRPPLMISGRSLPSFPPHDVSPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTS
RSGYLQRCLIKHLESLAISYDHTVRDSDNSVIQFAYGEDGLDVLKCQFLREDQFPFLDIN
SNAVIGEAVINKLKEDEDLKDVAKANKSLKKWKKKYGSPFEKVRTSGFVQFSAVEKKQIE
LDDLPTDRTRDPFYWELEKKWRAMDEEGRQQYTRKKCPDPIPSKMSPEYKFGVINEQLDS
IVQHYLKKRHSTAYDEHTPKDRFVDVMNAKYLESMAAPGEPVGLLAAQSIGEPSTQMTLN
TFHFAGRGDMNVTLGIPRLREILMTASAKLKTPNMDIPFRDDIPDLTKKAEKLRQKLNRV
TVADVLEKIDVQCQIVIRPERQLKTTMRFQFLPHSQYKTQYTVKPQQIIKHMQNKFFQEM
FSTVTKQAKAVSGIVWSSEKKKKRAKGSGGDDDDEDDVAEPEPANNVDADSSDDEAPNED
DDNTDARIRKKRTEEQEYEDPESGEEEKSDDEVELNDEQPTEKGEDVLDSTTVGNDAETS
KIATDVVSNFREATNYSFDTKQYKWCELTVLFPISFLRVDLSQALREAAMKSVIHEVKHI
KRAITNKEKNVLYLKTEGINILQMFKYNHLLDLNKLYSNDIHAIANTYGIEAANKVIIKE
IQNVFNVYGITVDPRHLTLVADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLIFLREA
VLNSKKDNIRSASSCLMLGQPCRSGTGTFSLQHFSKVIS
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcaagtcgacatacgccgcgtcgacgtcgggcctgacgtccgtcgaccctgag
tatgtacagtttctaatgttttctgacgaagacgtgaggaagcttagtgtcactaaaatc
actaatgtacaaagtttcgacgctatcggaaatcctacgaaaggaggtttgtatgactct
gctctcggacctttgagggacaggaatgaaacctgtggaacatgcaacaatgtgttatta
cactgcccgggacactttgggcatattgagctaccacttgtagtggtcaaccctatgttt
atcaaaaacatctattcactcttccgcgtgagttgcttaaaatgcttcaaaattcaaatg
gatgatagactgaagtttatattgaaacttcagctggaactagttgatgcaggtcacata
actgctgccttagacttggataactatgtaggggacatcaccagtggaaaagaaaattct
cccgacaaaccaaataaagtcatcagaaaataccaaaagttactgaagaagagagatgca
gttgtagaaacatttcaaaacaaaaacgttgataaattacgagcaaagtttattaatcaa
tattttagagtcattaacacagctaagaaatgtgcttattgtgcttgcaagttaatcaaa
gtgactacttcagaaaataagattatgtacaatctaagtgctgatggtgctgaaaaaggc
tctaaaggcataaaaatcctgatgcctgatgaaatcaaacgctactgcacttctattgct
caaaatgatgaagacatcctcaaatactgcttcccagttcttaaatactcaccaacacaa
ccagttactaacgctttcttcatggatgttgtacctgttctacctcctaatgtaagacct
tgcaatgttctgagaggagaacttgttgaacaccctcaaactaatgtgtataaggccata
ttacaaaatgcctttgcggcccgagcagtattacatgtactctcttcttcagaccaacaa
aaaacaattgacagtcttgatcagttaccaaggcaagcttatgaggctgttcaaggcaaa
acagctgcagaaaaacttcacacagtctggcaggaattacaaaagagtatcaataacctt
ttaaactgtgaaggtcagggattagcaagtcagggtctaaaacaaattattgaaaagaaa
actggtttaatcagaatgcatatgatgggtaaaagagttaattttgctgctcgatctgtt
atcacacccgaccctaatgtagatatagatgaaataggtattcctgatgcttttgctatg
aaactgacataccctattcctgtcactgaatggaatgtagatgaattgaggaaaatggtc
ataaatggtcctaacaaacatcctggtgctgagaaaattgaaatggagaatgggagagta
atcagcatagctgcagattctatacaaaagagaaagagtctagccaaaaggttgctaaca
cctgatgagtttaaggcatctggtcttaaagttgttcatagacatttggtgaatggtgat
gtgttgattttgaaccgacagccatctcttcacaagcccagtatgatggcacatagggcg
agaatattaaaaggagagaagacacttagattgcactatgccaactgcaaatcttacaat
gctgattttgatggtgatgaaatgaatgcccatttcccacagaatgaaattgctaggagt
gaagcctacaacattatgtctgtgacaaagcagtatcttgtaccaaaagatggaacacca
ctgagtgggcttattcaagatcatgtaatttctggagtaagaatgtccctgcgtggcaca
tttttcacaaaatccgactaccaacaactagtctttcaagcactccctaatcatagggga
ccaattaagctccttccacctacaatactcaagcctttagtgctttggtctggcaaacag
gttttgtcaacaattattattaatactacaccaaaaggaaagccctgtcttacattgatt
gggaaagcaaaaattagttctaaagcttggcaaaagactccacctagaccttggaaagct
ggtggtactccatttaataaccctaacacaatgacagaagctgaagtcgttattaggaaa
ggggaactcctgtctggtgttttagataaaacgcattatggtgccacgccatatggtcta
gtgcactgcatgtatgagctatacggaggagatagttcaagtgccttgctaagttccttc
tcaaaagtcttcacattttatttacaatggattggatttacacttggtgtcaaagatatt
ctagtagtagaagaagctgataaaaagcgcgatgactatatttgtttagtacgtaacgct
ggtaaagctgcagctgtgaaagctactgatctgcctgctgatgtcgatgacgaaaaatta
aaagaaactatcgaaatactacacactaaagaccctaaattcagaacgaatctggacaga
cagtacaaaactatgctagattcttacacaaataatattaatactgcttgtttgtctgag
gggctacttgagaaattcccttacaataacttgcaactgatggtccagtctggtgctaaa
ggttcaactgtcaacactatgcagatctcgtgcttacttggtcaaattgagttggaaggc
aaaagaccgccactcatgatatcgggaagatctttgccaagctttcctccacatgacgta
tcgccaagagctggtggattcatcgacggtagattcatgacaggaatccaaccacaagag
ttctttttccattgcatggccggtcgtgaaggcctcattgatactgccgtcaaaaccagt
cgatctggttacttgcaaagatgcttgattaagcatttggagagtttagctatttcctat
gatcatacagtaagggattcagataatagtgtcattcaattcgcttatggagaagatgga
ttagatgttctcaagtgtcaatttctcagagaagaccagtttccattccttgacataaat
tcaaacgcggtaattggagaagctgtgattaataaactgaaagaagatgaagatttaaaa
gacgttgcgaaagcaaataaatctttgaaaaaatggaagaagaagtacggtagtcctttc
gagaaggttcgaacgagcggctttgtccaattctctgctgttgagaaaaaacagattgaa
ttagacgatttaccgactgacagaacgagggacccgttttactgggagctagagaagaaa
tggcgtgctatggacgaagaaggaagacaacagtacacaaggaagaaatgcccagaccca
atccccagcaagatgtcgcctgaatacaaattcggtgtcattaatgagcagttagatagt
atagtgcaacattacttaaagaagcgtcattctactgcatatgacgaacatacgccaaaa
gatagattcgtagacgtgatgaatgctaaatatcttgaatcaatggccgctccaggtgag
ccagttggtttattagcagctcaatctataggagaaccttctactcagatgacactgaac
actttccactttgccggtcgtggtgacatgaacgtaacccttggtataccgcgtcttaga
gaaattcttatgactgcttcagctaagctcaaaacccccaacatggacattccgttccga
gacgatataccggacttgactaagaaagctgaaaaattacgacagaagctcaacagagtt
accgtagctgatgttttggagaagatagacgtgcaatgtcagatagttatccgacctgaa
aggcagttgaagacgacaatgcgcttccagtttttgccgcattctcagtacaagacacaa
tacacggtgaaaccacagcagattataaagcatatgcagaacaaattcttccaagagatg
ttttcaacggtgacaaagcaagcaaaggcagttagtggtattgtttggtcttctgaaaag
aagaagaaaagggctaaaggtagcggtggtgatgatgatgacgaggatgacgttgctgag
ccggagccggctaacaatgtggatgcagacagttctgatgatgaagcccctaatgaagat
gatgacaataccgatgctcgaatccgcaagaagagaacagaagagcaagaatacgaagac
cccgaatcgggcgaagaagagaaatctgatgatgaagtggaattgaatgatgaacaacct
acagaaaagggtgaggatgtcttagactcaactaccgttggcaacgacgccgaaactagc
aagatcgcgacagacgtagtctctaacttcagggaagctacaaattattccttcgacaca
aagcagtataaatggtgcgagctgaccgtactcttcccaatatcgttcctaagagtggac
ctgtctcaggctctccgagaagcggcaatgaaatccgtcatacacgaagtgaaacacata
aaacgagcgatcacaaacaaggaaaagaatgtcctgtacctcaaaactgaaggtataaac
attctacaaatgttcaaatacaatcatcttctagatttgaataaactttacagtaacgat
atacatgctatagctaatacatatggcattgaagcggcgaacaaagtgattattaaagaa
atacaaaatgtgtttaatgtctacggtattacggtggatcctagacatttgacgttggtc
gctgactacatgacttataatggtattttcgagcctatgagccgaaaaggaatggaagcg
tcgtcgtcgccgttacaacaaatgtcttttgaatcatcccttatattcttaagggaagct
gttttgaattctaagaaggataatattcgatcggcgtccagttgtctcatgttaggccag
ccttgtagaagtggtactggcacatttagtttacaacacttcagtaaggttatcagctaa
DBGET
integrated database retrieval system
