Helicobacter pylori PeCan18: HPPC18_05965
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Entry
HPPC18_05965 CDS
T02036
Name
(GenBank) bifunctional DNA-directed RNA polymerase subunit beta/beta'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hca
Helicobacter pylori PeCan18
Pathway
hca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPPC18_05965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hca03021
]
HPPC18_05965
03400 DNA repair and recombination proteins [BR:
hca03400
]
HPPC18_05965
Enzymes [BR:
hca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPPC18_05965
Transcription machinery [BR:
hca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPPC18_05965
DNA repair and recombination proteins [BR:
hca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPPC18_05965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AFI02921
UniProt:
I0EJ02
LinkDB
All DBs
Position
complement(1259511..1268183)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSSNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFSADHESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNVYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDVFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGRDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTKDFAKELRTKMLEIANAINEKDPLTIHVLENCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIMIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMSAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYANGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGVIKYYVLEANHLERTHGVKKGDIVSEKGLFAVVADDNGREAARHYIARGSEILIDDN
SEVSANSLISKPTTNTFKTIATWDPYNTPIIADFKGKVSFVDIIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEVRYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKSIRNKEHIIVTSRDGCLTDYFV
DKGKQILVHADEFVHAGEAMTDGVISSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRALEDNSKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagttcctaatttattattattgcaacgagacagctacgattctttcttgtat
tccaaagatggtaaagagagtgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttggaatacgcgggttgcgaatttggcaagtctaaatac
actgttagagaagcgatggagaggggcattacctactctatccccctcaaaattaaagtg
cgtttgatcttatgggaaaaagacaccaagagtggcgaaaagaacggcattaaggatatt
aaagagcaaagcattttcattcgtgagatccctttaatgacagaacgcacttcgtttatc
attaatggggtggagcgcgtggtggtcaatcagctccacagaagccccggtgtgattttt
aaagaagaggagtccagcacttcttcaaacaagctcatttacacagggcaaatcattcct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttgtacgctcgtatc
aacaaacgccgtaaagtgcctgttaccattttattcagggcgatggattatcaaaaacaa
gacattatcaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcttcattagacgccaatcaaagaatggaatttgacttgaaagacccgcaa
ggcaagattatccttttagcgggtaaaaagctcacttcaaggaaaattaaagaacttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgtcatttagct
gagcctgttatggtagggaaagaagttttattggacatgctcacgcagttggataaaaac
agactagaaaaaatccacgatctaggcgtgcaagaatttgtgatcatcaacgatttagcg
ttagggcatgacgcttccattatccattctttctcagccgatcatgagtctttgaaattg
ctcaagcaaactgaaaagattgatgatgaaaacgctctagcggcgattcgtatccataag
gttatgaaaccaggcgatcctgttacgactgaagtggctaagcaatttgtcaagaaactt
ttctttgaccctgaacgctatgatttgaccatggtagggcgcatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacatcacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagatcaaaaacaatcagggcaagattgatgatagggatcactta
ggcaatcgcaggatcagagccgttggggaactattggccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcaccaccatgagcggggcttttgattcg
ctcatgccccatgatttagtcaattctaaaatgatcaccagcacgatcatggaatttttc
atgggcggtcagctctcgcaattcatggatcaaaccaaccctttgagtgaggttacgcac
aaacgacgcctttcagcgctcggtgaaggggggttagtgaaagacagggtagggtttgaa
gccagggatgtgcaccccacgcattatggccgaatttgccccattgaaaccccagaaggt
caaaatatcggtttgatcaacaccctttccactttcacaagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtggtgggcgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcccgcaagcacccccattgatgaagag
gggaatattttaggcgatttgattgaaacgcgagtggaaggcgagatcgttttaaacgaa
aaaagcaaagtaaccttaatggatctaagctctagcatgctagtaggggtcgccgcatcg
ctcattcctttcttagagcatgatgacgctaaccgcgctctaatggggactaacatgcag
cgccaagccgtgcctttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggggcgatcaaggccaatcgcgcgggcgttgtagaaaaa
attgattctaaaaatgtttatattttaggcgaaggcaaagaagaggcttatattgacgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagtccctatc
gttaaagtgggcgataaagtggaagccgggcaaatcatcgctgatggccctagcatggac
agaggcgagttggcgttagggaaaaatgtgcgcgtggcgttcatgccttggaatggctat
aactttgaagacgcgatcgtggtgagtgagcgcatcactaaagacgatgttttcacttcc
acccacatttatgaaaaagaagtggacgctagggagcttaagcatggcgtggaagaattt
accgctgatattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtcggcacttacgtgagcgctggcatgattttagtgggtaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggctcttaagggcgatttttggggataaagcc
ggtcatgtggtcaataagagtttgtattgcccccccagtttggaaggcacggtgattgac
gtgaaggtcttcactaaaaaaggctatgagaaagacgcgcgagttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcgcgttagctcgctcctttctcaagcgattttagaagagcctttcagccat
aatggcagggattataaagaaggcgatcagatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagtttagtcaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaagaaagttttgggcgaagagcatgaagaaaag
ctctctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcagatatgccttataccgctgatggcgag
cctgtggatattgtcttaaaccctttaggcgtgccaagccgcatgaacattgggcagatt
ttagaaatgcatttaggcttagtggggaaagagtttgggaaacaaatcgctagcatgcta
gaggataaaaccaaagattttgccaaagaattgcgcactaaaatgctagaaatcgctaac
gccattaatgaaaaagaccccttgacaatccatgttcttgagaattgctctgatgaagag
cttttggaatacgccaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttacaagctgtttgaattagccaagattgccatggatggc
aaaatggatctgtatgatgggcgcaccggcgagaaaatgagggagcgcgtgaatgtgggc
tatatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggcccttatagtttagtaacgcaccagcctgtggggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggcgctagaagcttatggcgcggcgcacactctcaaa
gaaatgcttaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagcgaaatccctgagactttctatgttttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaggatgga
gcgcctaaacccattatgatcaaagaagatgacaggcctaaagactttagctctttccag
ctcactctagctagccctgaaaaaatccattcttggagttatggggaagttaaaaagcca
gaaacaatcaattatcgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccctactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcattccaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcatatctggtatgtcaattccttg
cctagccgtattggtacgcttttaggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagataggggctttgtagcgcaaatgggcggcgaagcgatcaaggatttgctagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacaccaattccgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgaatggatgatgctcacggtgttaccggtattgccaccggatttaaggcct
ttagtcgcactagatggcgggaagtttgcagtcagcgatgtgaatgaattgtatcgccgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggggcgccagaaatcatt
gtgcgcaacgaaaaaaggatgttgcaagaagctgtggatgtgctttttgataacggccgc
agcaccaatgcggttaaaggggctaacaaacgccctttaaaatcgctcagcgagattatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggttgggcctaaccttaaaatggatgaatgcgggttgcctaaaaac
atggcgttagagctcttcaaaccgcatctgttatccaagcttgaagagagaggctatgcc
accacgctcaaacaggctaaacgcatgattgagcaaaagagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgctactcaaccgcgctcctaccttgcacaag
caatccattcaagcgttccatccaaagcttattgatggcaaagcgatccaattgcacccg
ttagtgtgttcagcgttcaacgccgattttgatggggatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctgatgctaagctctatgaatatcctt
ttgcctgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagtggggtcaagggcgagcataagcttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatcgctacgagcgcggggcgcatgatcatcaagtccattttgcct
gattttatccctactgatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggtggtatcggcattaccgcaacctttttggataattta
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtagaggttaaaaaaatc
cagcaacaatacgatcaagggctgctcactgaccaagagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgagcgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcagatagcggcgcaagggggagtgcggca
caaatccgtcagctttcagcgatgagaggccttatgacaaagccagacggcagcatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggtgctagaaagggcttagcggatacagcgctaaaaacagccaatgcggggtat
ttgaccagaaagctcattgatgtttcgcaaaatgtcaaggtggtctctgatgattgtggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggcttgaatttaggcgaaggcaagatgagttatccgggtgaagcggtg
ggcgtggtagctgcgcaatctatcggggagcctggaactcagctcactttaaggactttc
catgtgggcgggacagcgagtaggagtcaggatgagcgcgaaattgtagcgagcaaagaa
ggttttgtgcgtttttacaaccttaggacttacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgat
caagaagctaaatttgttttaagaagaagcgatattgtcaagccgagcgaattagccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctaacgggcataaggtgcat
aagggaggaagtatcgctgatattatccaagagggctggaatgtgcctaatcgcatccct
tatgcgagcgaattgctggttaaagataatgaccctatcgcacaagatgtgtatgccaaa
gaaaaaggcgtgatcaaatactatgttttagaggccaatcatttagagcgcacccatgga
gtcaaaaagggcgatattgtgagcgaaaaaggcttgtttgcggtggtagctgatgataat
ggcagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagccttatttctaaacccacgaccaacactttcaaaacgatc
gccacatgggatccttacaacacccctatcattgcagactttaagggtaaggtgagtttt
gtggatattatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggtatcaca
agcctagtggtgaatgattacattccaagcgggtacaaaccaagcttgtttttagagggg
gctaatggcgaagaggtgcgttatttcctagagccaaaaacttctatcgctattagcgat
ggctctagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatcc
agggatattaccggaggtctcccaagggtttctgaactctttgaagcgagaaagcctaaa
cctaaagacgtggcgatcctttctgaggttgatgggattgtgagttttggcaaatctatc
cgcaataaagaacacatcatcgtaacttccagagatggttgtctcacagattattttgtg
gataaaggcaagcaaattttagtgcatgccgatgaatttgtgcatgcgggagaggcgatg
acggatggagtaatttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtaagcattgcggac
aaacacattgaaatcattgtgtctcaaatgttaaggcaagtgcgcatcttagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcact
agagcggctattgggagcgatagcatcatttcagcggcctctttccaagaaacgactaag
gttttaacagaagccagtattgcgatgaaaaaagactttttagaagatttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacgggcatgtataagaataaaaaaatcgtg
ttaagagcgcttgaggataactctaaattttga
DBGET
integrated database retrieval system
