Hippocampus comes (tiger tail seahorse): 109508358
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Entry
109508358 CDS
T04969
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03020
RNA polymerase
hcq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109508358 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
109508358 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcq03021
]
109508358 (polr2a)
03400 DNA repair and recombination proteins [BR:
hcq03400
]
109508358 (polr2a)
Enzymes [BR:
hcq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109508358 (polr2a)
Transcription machinery [BR:
hcq03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109508358 (polr2a)
DNA repair and recombination proteins [BR:
hcq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109508358 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
109508358
NCBI-ProteinID:
XP_019713831
UniProt:
A0A3Q2YWV8
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVMRCVCFFCSKLLVDAN
NPKIKDILGKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQDTEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
SRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNNDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DVTRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNMATLKPSNKAFEKKFKFDCSNERALRRTLQEDVVKDVMTNAHVQGTLEREFDKMKED
RENLRTIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPIRVVEGVQELSKKLVI
VNGEDRLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLTTEAFDWLLGEIETKFNHSVAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
KSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGRSPAMTPWNTGATPAHGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPNYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgccccttgcgcacgatcaagagagttcag
ttcggcatcatcagccctgatgagcttaaacgaatgtcggtaacagaagggggtatcaaa
taccctgaaacgacagaaggtggtcgtccaaaacttggtggtcttatggacccgagacaa
ggggtcatcgagcgaagtggaagatgtcagacgtgtgcaggtaacatgactgaatgcccg
ggacacttcggccacattgaactggcaaagccagtctttcacgtcggctttatatccaag
ataatgaaggtcatgcgttgcgtctgcttcttttgctccaagctactcgtggatgcgaac
aatcccaagatcaaagacatccttggcaagtccaaagggcaacccaggaagcgcttgacg
cacgtctacgagctgtgcaaaggcaaaaatatctgcgaaggaggcgaggagatggacaac
aaatttgggatggagcagcaggacaccgaggaggacatcactaaggagaagggacacggt
ggctgcgggcgctaccagcctcgcatcagacgctctggcctggagctgtacgccgagtgg
aagcacgtgaatgaggactcacaggagaagaagatcctgctgagccccgagcgcgtgcac
gagatcttcaagcgcatctcggacgaggaggacatcatcttgggcatggatcccaagttt
tcccgacccgaatggatgatcgtcaccgtgctgcccgtgcctccgctggccgtcaggccg
gccgtcgtcatgcagggctccgcccggaaccaggacgacttgacccacaagctggccgac
attgtcaaaatcaacaaccagctgaggcgaaacgagcaaagtggcgccgcagcccacgtc
atcgcagaggacgtcaagttgctccagttccacgtggccaccatggtggacaacgagctc
ccaggcttgcccagagcaatgcaaaagtccggccgtcctctcaaatccatcaaacagcgt
ctcaagggcaaggaaggcagagtccgaggcaacctgatgggcaagcgcgtcgacttctcg
gcgcgaaccgtcatcacgcctgatccgaatctccaaatcgaccaagtgggcgtcccgcga
tccatcgccgccaatatgaccttcccggaaattgtcacgcccttcaacaacgacagactg
caagagctcgtgcgacgaggcaacagccagtaccccggagccaaatacatcatccgcgac
aacggagacagaattgacctgcgatttcaccccaaaccaagtgaccttcatttgcagatt
ggctacaaggtggagagacacatgtgtgacggagacatcatcatctttaaccggcagccc
acactgcataaaatgtccatgatgggtcacagggttcgaattctgccctggtccacgttt
cggctcaacctgagtgtcaccacgccctacaacgccgattttgacggcgacgagatgaac
ctgcacctgccgcagtccctggagaccagagccgagatccaagagctggccatggtgccg
cgaatgatcgtcacgccccagtccaacaggcccgtcatgggcatcgtgcaggacactctg
acggccgtgcgcaaattcaccaagagggacgtcttcttagagcggggcgaagtcatgaac
ctcctgatgttcctctccacctgggacgggaaggtcccccagccggccatcctcaagccc
cgcccactgtggaccggcaagcagatcttcagcctgatcatcccgggacacatcaacgtc
atccgcacgcacagcacgcatccggacgacgaagacagcggtccttataaacacatctcg
cccggcgacaccaaggtgatcgtggaaaacggcgagttgatcatgggcatcctgtgtaag
aagtctctgggaacgtcggccggttccctggtccacatttcctacctggagatgggccac
gacgtcacccgactcttctactccaacatccagacggtggtcaacaactggctgctcatc
gaaggtcattccatcggcatcggggactccattgccgatgccaagacttacctggacatc
cagaacacgatcaagaaagccaaacaggatgtgatagaagtcatcgagaaggcccacaac
aacgagctggagcccaccccgggcaacacgctgaggcagacctttgagaaccaggtcaat
cggatcctcaacgacgcccgtgacaagacgggctcgtcggcccagaagtctctgtcggaa
tacaacaacttcaagtccatggtggtggccggatccaagggctccaagattaacatctcg
caggttatcgcggtggtggggcagcagaacgtggaggggaaacgaatcccgttcggtttc
aaacaccgcacgctgcctcacttcatcaaggacgattacggccccgagagcagaggcttt
gtggagaactcctacctggccggcctgacgcccaccgagttcttcttccacgccatggga
ggtcgagagggtctgatcgacacggccgtcaagaccgctgagaccggttacatccagcgg
cgtctgatcaagtccatggagtccgtgatggtcaagtatgacggcacggtgcgcaactcc
atcaaccaggtggtgcagctgcgttacggcgaagacggcctggcgggggagaatgtcgag
ttccaaaatatggcgacgctcaagccgtcaaacaaagcctttgaaaagaagttcaagttc
gactgcagcaacgagcgggcgctgaggcgaacgttgcaggaggacgtcgtgaaagacgtg
atgaccaacgcccacgtgcaaggcacgctggagcgagagtttgacaagatgaaggaggac
cgggagaacctccgaacgattttccccaccggcgacagcaaggtggtgctgccgtgcaac
ttggcccgaatgatttggaacgcgcagaagatcttccgcatcaacacccggactccgacc
gacctcaatccaattcgggttgtcgaaggtgttcaggagctgagcaagaagctggtgatt
gtgaacggcgaagaccggctcagcaggcaggcccaagagaacgccacgcttctcttcaac
atccacctgcgctccaccctctgctccaagcgcatgaccgaagagttccgcctcaccacc
gaggctttcgactggctgctgggagagatcgagaccaagttcaaccactctgttgcccat
ccgggtgaaatggtcggcgcgctagccgctcagtctctcggagaaccggccactcagatg
accttgaacaccttccactacgccggcgtgtcggccaagaacgtgacgctcggcgtgccc
cgtctcaaggagttgatcaacatttccaagaagcccaaaacgccctcgctgacggtgttc
ttgctgggccaggccgcgagggatgccgagagagccaaagacatcctctgtcgcctcgag
cacaccacactaagaaaggtgaccgccaacaccgccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgccggatttt
gacgtgacccgcatttccccctggctgttgcgcatcgagctcgaccgcaagcacatgacc
gatcgcaagctgaccatggagcagatcgccgagaagatcaacgcaggtttcggagacgac
ctgaactgcatcttcaatgacgacaacgcggagaagctcgtcttgcgaatccggatcatg
aagagcgacgagaacaagttccaagaggacgaagaggtggtggacaaaatggacgacgac
gtcttcctgcggtgcatcgagtccaacatgctgacggacatgacgctgcaaggcatcgag
cagatcagcaaggtgtacatgcacctgccccagacggacaacaagaagaagatcatcatc
accgaggacggcgagttcaaggcgctgcaggagtggatcctggagacggacggcgtcagc
ctcatgagggtcctgagcgagaaggacgtggatcccgtcaggaccacgtccaacgacatc
gtggagatcttcacggtgctcggaatcgaggctgtgcggaaggccctggagagggagctg
taccacgtcatctccttcgacggctcctacgtcaactaccggcacttggccctgctgtgc
gacaccatgacgtgccgcggccacctgatggccatcacgcgtcacggcatcaaccggcag
gacacggggccgctcatgaagtgttcctttgaggagacggtggatgtgttgatggaggcg
tcgtcccacggagaaagcgatccgatgaagggcgtgtctgagaacatcatgctgggccag
ctcgctcccgccggcacgggctgcttcgacctgctcctggatgcggaaaagtgcaagtac
ggcatggagatccccaccaacatacccggcatcagcgtcgccggccccaccggaatgttc
tttggctctgtgccgagtcccatgagtggccgctcccctgccatgaccccgtggaacacc
ggcgcaacaccggcccacggcgcctggtctcccagtgttgggagcggcatgacccccgga
gcagccggcttctccccaagtgcggcgtcggacgccagcggcttctctccgggttattcc
ccggcttggtcgcccactcccgggtcccctggatcccccggacctgccagcccttacatc
ccttctccaggtggcgccatgtcacccaactactcgcccacgtcacccgcctacgagccc
cgctcccccggcggctacaccccccagagccctggctactcgcccacgtcgccttcctat
tccccgacgtcgccctcttactcccccaccagccccaattacagcccgacctccccttcc
tactcgcccacctccccgagttactcccccacgtcgccgtcctactcgcccacgtcgcct
tcgtactccccgacgtccccctcctattcacccacctcgccgtcttactcgccgacgtct
ccctcctattcgcccacctcgcccagctacagccccacttcacccagctacagcccaacg
tcgccgtcgtactcccccacctctccttcttactcccccacctccccctcttattccccc
acttccccgtcatactcccccacctcgccgtcgtactcccccacctctccctcctactcg
ccaacgagccccagctacagccccacgtcgcccaactacacgcccacctcgcccagctac
tccccgacttccccctcctactctcccacctcgccctcctactctccgacctcccccaac
tatacaccgaccagccccaactactctcccacctccccctcgtactctcccacctcaccg
tcctactcgccctccagtccgcgttacaccccgcagtcgcccacctacacacccagctcg
ccctcgtacagccccagctccccctcctactcacccacctcgcctaaatacaccccgact
tcgccctcgtacagtcccagctccccagagtacacccccacctcgcccaagtactccccg
acctcacccaagtactccccgacctctcccaagtactccccgacctcgcccacttattct
ccgacgacgcccaagtacagccccacctcgcccacctactccccgacctccccgacttac
acgcccaccagccccaaatactcccccacctcgccgacgtattcgccgacgtcgcccaag
tactcgccgacctcgcccacgtactctccaaccagccccaaaggctccacctacagcccc
acctcgcccggatacagccccacctcgccaaactacagcccggccatcagccccgacgac
agcgacgaggagaacaactga
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integrated database retrieval system
