Helicobacter pylori SNT49: HPSNT_05985
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Entry
HPSNT_05985 CDS
T01916
Name
(GenBank) bifunctional DNA-directed RNA polymerase subunit beta/beta'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hen
Helicobacter pylori SNT49
Pathway
hen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPSNT_05985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hen03021
]
HPSNT_05985
03400 DNA repair and recombination proteins [BR:
hen03400
]
HPSNT_05985
Enzymes [BR:
hen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPSNT_05985
Transcription machinery [BR:
hen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPSNT_05985
DNA repair and recombination proteins [BR:
hen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPSNT_05985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AEN17326
UniProt:
G2MFD8
LinkDB
All DBs
Position
complement(1225603..1234275)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLKSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVGAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKVKLNMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLVSLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKFSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIARMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLENCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGAKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDHVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMTAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELHIETVYEEVVVSVKNGEQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGTIKYYVLEANHLERTHGIKKGNIVSEKGLFAVIADDNGREAARHYIARGSEILIDDN
GEVSTNSLISKPTTNALSTIATWDPYNTPIIADFKGRVSFMDIIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEARYFLEPKTSIAVSDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRTLEDGPKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagtccctaatttattattattacaacgagacagctatgattctttcttgtat
tccaaagatggcaaagagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttagaatacgcgggttgcgaatttggcaagtctaaatac
accgttagagaagcgatggagagaggcattacttattctatcccgcttaaaattaaagtg
cgcttgatcttgtgggaaaaagataccaaaagcggtgaaaagaacggcatcaaggatatt
aaagaacaaagcattttcattcgtgagatccctttgatgacagaacgcacttcattcatt
atcaatggggtggagcgcgtggtggtcaatcaactccacagaagccccggtgtgattttc
aaagaagaagagtccagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttatacgctcgtatc
aataaacgccgtaaagtgcctgttactattttattcagggcgatggattatcaaaaacaa
gacatcatcaagatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcttcattagacgccaatcaaagaatggaatttgacttgaaagatcctcaa
ggcaaggttattcttttagcaggaaaaaagctcacttcaagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaatacccaatggatattttactcaatcgccatttagct
gagcctgttatggtagggaaagaagtcttattggacatgctcactcaactagataaaaac
aaattagaaaaaattcacgatttaggcgtgcaagaatttgtgatcatcaacgatctagct
ttagggcatgacgcttccattatccattctttttcagccgattctgagtctttgaaattg
ctcaagcaaacggaaaaaattgatgatgaaaacgctctagcggcgattcgtatccataaa
gttatgaaaccaggcgatcctgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatccagaacgctatgatttgaccatggtgggccgtatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacattacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagattaaaaacaatcagggcaagattgatgacagggaccacttg
ggcaatcgtaggatcagggcggtaggggagttattggccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagcggggcttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggtggtcagctctcgcaatttatggatcaaacgaaccccttgagtgaggttacgcac
aaacgccgcctttcagcgctcggtgaagggggattggtgaaagacagggtagggttcgaa
gctagggatgtgcaccccacgcattatggccgaatctgtcccattgagaccccagaaggt
caaaatatcggtctgatcaacaccctttccactttcacaagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtagtgggtgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcccgcaagcacccccattgatgaagag
ggtaatattttaggcgatttgattgaaacgcgcgtggaaggcgagatcgttttaaacgaa
aaaagcaaagtaactttaatggatttaagctctagcatgctagtaggggtagccgcatcg
ctcattcctttcttagagcatgatgacgccaaccgcgccttaatggggactaacatgcag
cgccaagcggtaccgctattaaaaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaagccaaccgcgcaggcgttgtagaaaaa
attgattctaaaaatatttatattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagttcctatc
gttaaagtgggcgataaagtgggagccgggcaaatcatcgctgatggccctagcatggat
agaggcgagttagcgttagggaagaatgtgcgcgtggcgttcatgccttggaatggctat
aactttgaagacgcgatcgtggtgagtgagcgcatcactaaagatgatattttcacttcc
acccacatttatgaaaaagaagtggatgctagggagcttaagcatggcgtggaagaattt
accgctgacattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtgggcacttatgtgagcgctggcatgattttagtgggcaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggcttttaagggctatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgcccccccagtttggaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggctatgagaaagacgcgcgggttttgagcgcgtatgaa
gaagaaaaagtcaagcttaatatggagcattttgatcgcttgaccatgctcaatagagaa
gaattgttgcgcgttagttcgctcctttctcaagcgattttagaagagcctttcagccat
aacggcaaggattataaagaaggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggtcagtttggtgaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaagaaagtcttgggcgaagagcatgaagaaaag
ttttctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcagatatgccttataccgctgatggcgaa
cctgtagatattgtcttaaaccctttaggcgtgccaagccgcatgaatatcgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttgggaagcaaatcgctcgcatgcta
gaagataaaaccaaagattttgccaaagaattgcgcgctaaaatgctagaaatcgctaac
gccattaatgaaaaagaccccttgacaatccatgtgcttgaaaattgttctgatgaagag
cttttggaatacgcaaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttataagctatttgaattagctaagatcgctatggatggc
aaaatggatctgtatgacgggcgcacaggcgagaaaatgagggagcgcgtgaatgtgggc
tacatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggcccttatagcttggtaacgcaccagcccgtgggaggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggcgttagaagcttatggcgcagcgcacactctaaaa
gaaatgctcaccattaaatccgatgacattagaggcagagagaatgcttatagggctatc
gctaaaggtgagcaagtgggcgagagtgaaatccctgagactttctatgttttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaagatgga
gcgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagctctttccag
cttactctagccagccctgaaaaaatccattcttggagttatggggaagttaaaaagcca
gaaacgatcaattaccgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccccactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcatatctggtatgtcaattccttg
cctagccgtatcggcacgcttttgggtgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcgctaaa
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggctttgtagcgcaaatgggcggcgaagcgatcaaggatttgctagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagataccaattccgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgagtggatgatgctcacggttttaccggtattgccaccggatttaaggcct
ttagtcgcgctagatggcgggaagtttgcggtcagtgatgtgaatgaattgtatcgtcgt
gttattaatcgtaaccaacgcttgaaacgcttaatggagcttggggcgccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgc
agcaccaatgcggttaaaggggctaacaagcgccctttaaaatcgctcagtgaaatcata
aaaggcaagcaagggcgtttcaggcaaaacctgttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggttgggcctaatcttaaaatggatgaatgcgggttgcctaaaaac
atggcgttagaactcttcaaaccgcatttgttatccaagcttgaagagagaggctatgcc
accacgctcaaacaagctaaacgcatgattgaacaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgttactcaaccgcgctcctaccttgcacaaa
caatccattcaagcgttccatcccaagcttattgatggcaaagcgatccaattgcacccg
ttagtgtgttcagcgttcaacgccgattttgacggggaccaaatggcggtgcatgtgcct
ttaagccaagaagcgatcgctgaatgcaaggtgctgatgttaagctctatgaatatcctt
ctgcccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagcggggtcaagggtgagcataagcttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatcgctacgagtgcagggcgcatgatcatcaagtccattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggatcatgtgcataaagtcggcggtatcggcattaccgcaacttttttagataattta
aaaacgcttggctttaggtatgcgactaaggcgggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtagaggttaaaaaaatc
cagcaacaatacgatcaaggactgctcactgaccaggagcgttacaataagatcattgac
acttggactgaagtcaatgacaagatgagtaaagaaatgatgaccgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcagatagcggtgcaaggggtagcgcggcg
caaatccgtcagctttcagcgatgaggggtcttatgacaaagccggacggcagcatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatacttcaactcc
acgcatggcgctagaaagggcttagcggatacagcattaaaaacagccaatgcggggtat
ttgacaagaaagctcattgatgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaagtggttgaagcc
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctacggcttgaatttaggcgaaggcaagatgagttatccaggtgaagcggtg
ggcgtggtagccgcgcaatctatcggggagcctggaacgcagctcactttaaggactttc
catgtgggcgggacagcgagcaggagccaggatgagcgcgaaattgtagcgagcaaagaa
ggttttgtgcgtttctacaaccttaggacttacacgaataaagagggtaaaaacattatc
gctaaccgccgtaatgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacacattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgag
caagaagctaaatttgttttaagaagaagcgatattgtcaagccaagtgaattggccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctagtgggcataaggtgcat
aaggggggaagtatcgctgatattatccaagagggctggaatgtgcctaatcgcatccct
tatgcgagcgaattgttagtcaaagataatgaccctattgcgcaagatgtgtatgccaaa
gaaaaaggcacaatcaaatactatgtgttagaggccaatcatttagagcgcacccatggg
atcaaaaagggcaatattgtgagcgaaaaaggcttgtttgcggtgatagctgacgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgacaat
ggtgaagtgagcactaatagccttatttctaagcctactacaaatgcgttaagcacgatt
gccacatgggatccttataacacccctatcattgcggactttaaaggcagggtgagtttt
atggacattatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggtatcaca
agcttagtggtgaatgattacattccaagcggatacaaaccaagcttgtttttagagggg
gctaatggcgaagaagcgcgttatttcctagagccaaaaacttctatcgctgttagcgat
ggctctagcgtggagcaggctgaagtgttagccaagatccctaaagcgaccgttaaatcc
agggatattaccgggggtctcccaagggtttcggaactctttgaagcgagaaaacccaaa
cctaaagatgtggcgatcctttctgaagttgatgggatagtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacttctaaagatggccgttccatggattatttcgtg
gataaaggcaagcaaattttagtgcatgccgatgaatttgtgcatgcgggagaagcgatg
acggatggagtggtttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtaccgcaggcagggggtaagcattgcggac
aagcacattgaaatcattgtttctcaaatgctaaggcaagtgcgtattttagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagcctgcgattgctgaaccggtgcttttagggattact
agagcggctatcgggagcgatagcatcatctcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtatcgctatgaaaaaagactttttagaagacttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacaggcatgtataagaataaaaaaatcgtg
ctgagaacgcttgaagatggtcctaaattttga
DBGET
integrated database retrieval system
