Helicobacter pylori F32: HPF32_1129
Help
Entry
HPF32_1129 CDS
T01911
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
heq
Helicobacter pylori F32
Pathway
heq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
heq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPF32_1129 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
heq03021
]
HPF32_1129 (rpoB)
03400 DNA repair and recombination proteins [BR:
heq03400
]
HPF32_1129 (rpoB)
Enzymes [BR:
heq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPF32_1129 (rpoB)
Transcription machinery [BR:
heq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPF32_1129 (rpoB)
DNA repair and recombination proteins [BR:
heq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPF32_1129 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BAJ58711
LinkDB
All DBs
Position
complement(1206960..1215632)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DDHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQIPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQISKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIANMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLESCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTRELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKIEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMSAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTTVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGAIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGREAARHYIARGSEILIDDN
NEVSANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVGFVDIIAGVTVAEKEDENTGTT
SLVVNDYIPSGYKPSLFLEGANGEEVRYFLEPKTSIAIIDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRTLEDGPKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagtccctaatttattattattacaacgagacagctatgattctttcttgtat
tctaaagatggtaaagagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgatcataaccgtatcactttagaatacgcaggttgtgaatttggcaagtctaaatac
actgttagagaagcgatggagagaggcattacctactctatcccccttaaaattaaagtg
cgcttgatcttgtgggaaaaagacaccaaaagtggcgaaaagaacggcattaaggatatt
aaagaacaaagcattttcattcgtgagatccctttgatgacggaacgcacttcatttatt
atcaatggggtggagcgcgtggtcgtcaatcaactccacagaagccccggtgtgattttc
aaagaagaagagtccagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggttgtattttgaatacgattctaaagatgttttatacgctcgtatc
aacaaacgccgtaaagtgcctgttactattttattcagggcgatggattatcaaaaacaa
gacattatcaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataagtatttg
atcccgtttgcttcattagacgccaatcaaagaatggaatttgacttgaaagatcctcaa
ggcaaggttattcttttagcgggtaaaaaactcacttcaagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgtcatttagct
gagcctgttatggtggggaaagaagtcttattggacatgctcactcagctagataaaaac
aaattagaaaaaatccacgatttaggcgtgcaagaatttgtgattatcaacgatctagcg
ttagggcatgacgcttccattatccattctttttcagccgattctgagtctttgaaatta
ctcaaacaaactgaaaaaattgatgatgaaaacgctctagcggcgattcgtatccataag
gttatgaaaccaggcgatcctgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatccagaacgctatgatttaaccatggtgggccgtatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacattacgaccttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagattaaaaacaatcagggcaagattgatgatagagatcacttg
ggcaatcgtagaatcagggcggtaggggaattactagctaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagcggggcttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggcggccagctctcgcagtttatggatcaaactaaccccttgagtgaggttacgcac
aaacgccgcctttcagcgctcggtgaagggggattggtgaaagatagggtagggtttgaa
gctagggatgtgcaccccacgcattatggccgaatttgccccattgaaaccccagaaggt
caaaatatcggtctgatcaacaccctttccactttcacgagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggtaaggtagtgggtgagacgatttatttg
accgctattcaagaagacagccatatcatcgctcccgcaagcacccccattgatgaagag
ggtaatattttaggcgatttgattgaaacgcgcgtggaaggcgagatcgttttaaacgaa
aaaagcaaagtaaccttaatggatttaagctctagcatgctagtaggggtcgccgcatcg
ctcattcctttcttagagcatgatgacgccaaccgcgccttaatggggactaacatgcaa
cgccaagcggtgccgttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaggccaatcgtgcaggagtcgtagaaaaa
attgattctaaaaatatttatattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttacaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaaatccctatc
gttaaagtgggcgataaagtggaagccggacaaatcatcgctgatggccctagcatggat
agaggcgagttggcgttagggaaaaatgtgcgcgtagcgttcatgccttggaatggctat
aactttgaagacgccatcgtggtgagtgagcgcatcactaaagatgatattttcacttcc
acccacatttatgaaaaagaagtggatgccagggagcttaagcatggcgtggaagaattt
accgctgatattcctgatgtgaaagaagaagcactcgctcatcttgatgaaagcgggatc
gttaaagtgggcacttatgtgagcgctggcatgattttagtgggtaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggcttttaagggctatttttggggataaagct
gggcatgtggtcaataagagcttgtattgccctccaagcttggaaggcacagtgattgat
gtgaaagtcttcactaaaaagggctatgagaaagacgcgcgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcgcgttagctcgctcctttctcaagcgattttagaagagcctttcagccat
aatggcaaggactataaagaaggcgatcaaatctctaaagaagaaatcgcttcaatcaac
cgcttcactttggccagtttggtgaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaaaaaagtcttgggcgaagagcatgaagaaaag
ctttctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcggatatgccttataccgctgatggcgag
cctgtagatattgtcttaaaccctttaggcgtgccaagccgcatgaatattgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttgggaagcaaatcgctaacatgcta
gaggataaaaccaaagattttgccaaagaattgcgcgctaaaatgctagaaatcgctaac
gctattaatgaaaaagaccccttgacaatccatgttcttgagagttgttctgatgaagag
cttttggaatacgcaaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttataagctatttgaattagccaagatcgctatggatggc
aaaatggatctgtatgacgggcgcacaggcgagaaaatgagggaacgcgtgaatgtgggc
tatatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggcccttatagcttagtaacgcaccagcctgttgggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggcgctagaagcttatggcgcagcgcacactctaaaa
gaaatgctcaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggtgagagcgaaatccctgagactttctatgttttgactaga
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaagatgga
gcgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagttctttccag
ctcactctagctagccctgaaaaaatccattcttggagttatggggaagttaaaaagcca
gaaacgatcaattatcgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccccactaaagattatgaatgcttgtgcggtaaatacaaaaaacctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtagcgatcacgcactccaaggtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcacatatctggtatgtcaattccttg
cctagccgtatcggcacgcttttaggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaggcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggctttgtagcgcaaatgggcggcgaagcgatcaaggatttgctagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacaccaattccgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgaatggatgatgctcacggtgttaccggtattgccaccggatttaaggcct
ttagtcgcgctagatggcgggaagtttgcagtcagcgatgtgaatgaattgtatcgtcgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggggcgccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgc
agcaccaatgcggttaaaggggctaacaagcgccctttaaaatcgctcagtgaaatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggttggaccaaacctcaagatggacgagtgcggattgcctaaaaac
atggcgttagaactcttcaaaccgcatttattatccaagcttgaagagagaggctatgcc
accacgctcaaacaggctaaacgcatgattgagcaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgctactcaaccgcgctcctaccttgcacaag
caatccattcaagcgttccatccaaagcttattgacggcaaagcgatccaattgcacccg
ttagtgtgttcagcattcaacgccgattttgacggggatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctgatgttaagctcaatgaatattctt
ctgcccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagcggggtcaagggcgagcataagcttttttctagcgtgaat
gaaatcatcaccgctattgatacgaaagaattagacattcacgcaaagattagggtttta
gatcaagggaatattatcgctacgagcgcggggcgcatgatcattaagtccattttgcct
gattttatccctactgatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggcggtatcggcattaccgcaacctttttggataattta
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaggatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaaatagaggttaaaaaaatc
cagcaacaatacgatcaagggctgctcactgaccaagagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgagcgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcagatagcggtgcaaggggtagcgcggcg
caaatccgtcagctttcagcgatgagaggccttatgacaaagccagatggcagtatcatt
gaaacgcccattatttctaactttaaagagggattgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggcttagcggatacagcgctaaaaacagccaatgcggggtat
ttgacaagaaagctcattgatgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccacagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggcttgaatttaggcgaaggcaagatgagttatccgggtgaagcggtg
ggcgtggtagctgcgcaatctatcggggagcctggaactcagctcactttaaggactttc
catgtgggcgggacagcgagcaggagtcaagatgagcgcgaaattgtagcgagcaaagaa
ggttttgtgcgtttctacaaccttaggacttacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaacggcgat
caagaagctaaatttgttttaaggagaagcgatattgtcaagccaagcgaattggccggc
gttggcggtaaaattgaggggaaagtgtatttgccttatgctagtgggcataaggtgcat
aagggggggagtatcgctgatattatccaagagggctggaatgtgcctaatcgcatccct
tacgcgagcgaattactagtcaaggataatgaccctattgcacaagatgtgtatgccaaa
gaaaaaggtgcaatcaaatactatgttttagaggctaaccatttagaacgcacccatggg
atcaaaaagggcgatattgtgagcgaaaaaggcttgtttgcggtgatagctgatgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
aatgaagtgagcgctaatagcgtgatttctaaacccacgactaacactttcaaaacgatt
gccacatgggatccttacaacacccccatcattgcggactttaaaggtaaggtgggtttt
gtggatattatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggcaccaca
agcttagtggtgaatgattacattccaagcggatacaaaccaagcttgtttttagaaggg
gctaatggcgaagaggtgcgttatttcctagagccaaaaacttctatcgctattattgat
ggctctagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatct
agggatattaccgggggtctcccaagggtttcagaactctttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagtggatgggattgtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacttctaaagatggccgttccatggattattttgtg
gataaaggcaagcaaattttagtgcatgccgatgaatttgtgcatgcgggagaagcgatg
acggatggcgtggtttcaagccatgatattttaaggatcagtggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtaagcattgcggac
aagcacattgaaatcattgtttctcaaatgctaaggcaagtacgcattttagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgccttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcact
agagcggctattgggagcgatagcatcatttcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtatcgctatgaaaaaagactttttagaggatttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacaggcatgtataagaataaaaaaatcgtg
ctaagaacgcttgaagatggccctaaattttga
DBGET
integrated database retrieval system
