Helicobacter felis: HFELIS_05360
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Entry
HFELIS_05360 CDS
T01375
Name
(GenBank) bifunctional DNA-directed RNA polymerase beta' chain
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hfe
Helicobacter felis
Pathway
hfe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hfe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HFELIS_05360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hfe03021
]
HFELIS_05360
03400 DNA repair and recombination proteins [BR:
hfe03400
]
HFELIS_05360
Enzymes [BR:
hfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HFELIS_05360
Transcription machinery [BR:
hfe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HFELIS_05360
DNA repair and recombination proteins [BR:
hfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HFELIS_05360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb1_3
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
Peptidase_M23
RnfC_N
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CBY82620
UniProt:
E7AA48
LinkDB
All DBs
Position
507604..516264
Genome browser
AA seq
2886 aa
AA seq
DB search
MQYSALTQRLRADFTKMAQELEVPNLLLLQKNSYEAFLHPKGGRESGIERVFKSVFPIHD
TQNRITLEYDGCEYGKSKYTVREAMERGITYSVPLKIKIRLILWEKDPKTEERLGPKDIK
EQSIFIREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEKSTTSANKLIYTGQIIPD
RGSWLYFEYDAKDTLHVRINKRRKVSATILFRALGYSKQDIIRIFYPLLKVRCVGEKYYI
PFADINLDQHFDFDLKDDKGNVLVVANKKLSNKKARDLRASKIEWVEYPSDVLRNRYLAE
PVLNAQGEVLLDSLTLLETSKLEKIQEAGISEFVIANDLALGHDVALIQSFLGDADALRL
LRQSEKIEDESALAAIRIYKVMRPGDPVTPDVAKAYVQQLFFDPERYDLTMVGRMKMNHK
LQVKVPDYVTVLTHEDIIATMKYLIKIKNGQGQIDDRDHLGNRRIRAVGELLANELHEGL
MKMQKTIKDKLSTMNNALESLMPHDLVNSKTITSTILEFFMSGQLSQFMDQTNLLSEVTH
KRRISALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVINGKVSEEVVYLTAIQEEGQVIAPASTRIDAQGYIQDDFLETRVSGEIVMRE
KDKVTLMDLSSRMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLKAETPIVGTGIES
IIARDSWGSVKATRSGIVEKVDSKNIYILGEGEQTYIDAYLLQKNLRTNQNTCFNQTPIV
KVGDRVQAGQIIADGPSMDSGELALGKNIRVAFMPWNGYNFEDAIVVSEKITKDDVFTSV
HIYEKEVEARELKHGIEEFTADIPDVKEEEVAHLDSGGIVKIGTYVNAGMILVGKVSPKG
EMKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGVVIGVHILTKKGYEKDARAVSAYEE
EKATLDIEHFDRLTMLNREELLQISALFSKEPLEESTTLNDITYPKGSKIPKDVVMEINR
FGLASLAKKYRKAVQDQFEHIKTNFLEQKKILGQEHEEKLSILEKDDILPNGVIKKVKIY
IATKRKLKVGDKMAGRHGNKGIVSNIVPIADMPYTADGEPVDIVLNPLGVPSRMNIGQIL
EVHLGLVGKQLGGQIDALLKSHTQDMLAKLRAKMLEIAHVVNIQNDSLAKMLENCPDETL
LAYARDWSSGVKFAIPVFEGISEEQFKRLFELAQIDPDGKVELYDGRTGEKMKERVNVGY
MYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALESYGAAHTLKE
MLTIKSDDIKGRENAYKAVARGEHVGESEIPETFYVLTKELQSLGLEVSIFGDEVDEFGA
PKPIAIKEDERPKDFSSFQLTLASPDKIREWSYGEVKKPETINYRTLKPERDGLFCMKIF
GPTKDYECLCGKYKKPRYKTIGSCEKCGVAITSSKVRSFRMGHIELATPVAHIWYVNSLP
SRIGTLLGIKMKDLERVLYYEAYIVQEPGEAFYDLENTKPVCKYDILNEEQFQSVARRYE
DHGFVAHMGGEVIKNLLEELDLVHLLNSLKEEVKGTNSDAKKKKLIKRLKVVESFLNSGN
RPEWMVLTALPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIV
RNEKRMLQESVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGR
SVIVVGPNLQMDQCGLPKNMALELFKPHLLSKLEEKGFATTLKQAKRMIEQKTNEVWECL
EEIVDGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPL
SQEAITECKVLMLSSMNILLPASGKAVAVPSQDMVLGIYYLSLEKKDVLGGHKIFSGVAE
VLVAIDAKELDLHAKVRVLQDRHILETTAGRLVIKSILPEFVPPHLWNKVMKKKDIGALV
DFVYKEGGIGKTAQFLDNLKMLGFRYATQAGISISIEDIITPHNKAHLIENAKEQVKAIQ
GQSEGGHLSEQERYNKIIDIWTEVNDVMGKEMMEAIAKDKQGFNSIYMMADSGARGSATQ
IRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTATAGYL
TRKLIDVAQNVKVVQEDCGTHEGIEITDITVGSELIEPLEERIFGRVLVEDIIDPLTNEI
LLNTDTLIDEEKAKKIVEAGIKSVTIRTPITCKAHKGVCAKCYGLNLGEGKMVKPGEAVG
VVAAQSIGEPGTQLTLRTFHVGGTASRSQEEREIVANNEGFVRFFNVKTYKNKEGKNIIA
NRRNAAILVVEPKIKAPFDGEIRIDNSHEEVVLSVLNGAQEARFVLRKSDVAKPNELAGV
SGKIEGKIYLPYGSGHKVHKGGSIADIIKDSWNVPNRIPYASEITINDNDPITQDIYAKE
KGVVKYYNLVDDHLERFRDIQVGAVVSEKGLFAVVADENDREAIRHYIARGSVIETGDNS
PVEPKTLLVKANQEAKHLIATWDPYSTPIIADIKGKVYFQDIVPGVSVTQVEDQNTNIST
MTVNDYIPNDLKPCLVIEAETGEEITYPLESKTAIMVNDGAQVEVADILAKVPKATAKSK
DITGGLPRVSDIFEARKSKPKDTAILSEKDGIVSFGKAVRNKERVVIEASDGSRSEHFVD
KGKKILVHPNEFVHAGEAITEGVVSSHDILRISGEKELHKYIVSEVQKVYRGQGVNIADK
HIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKHFREENQRVLSLKGEPAIAEPVLLGITR
AAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGLYKDKRICL
QLEEVE
NT seq
8661 nt
NT seq
+upstream
nt +downstream
nt
atgcagtattcagccttgactcagcgcttgcgtgcggatttcactaaaatggctcaggag
ttggaagttcccaatttattgcttttgcagaaaaatagctatgaggcttttctccaccct
aaaggggggcgtgaaagtgggattgagcgggtgtttaaatccgtttttcccatccacgac
acccaaaaccgcatcactttggaatacgatgggtgcgagtatggtaagagtaagtacaca
gtgcgtgaggcgatggagagaggcatcacttactctgtgcctcttaaaatcaaaatccgt
cttattttgtgggaaaaagatcccaagacagaggagagactaggtcccaaagatattaag
gaacaaagtatttttatccgtgaaattcccttgatgaccgatcgcacttcctttatcatc
aatggggtagaacgcgtggtggttaaccaattgcaccgcagtcccggtgtgatttttaaa
gaggaaaaatctactaccagtgccaataagctcatttacaccggtcaaattattcccgat
cgtggctcatggctctattttgaatacgatgctaaggacactttacatgtgcgcatcaac
aaacgccgtaaagtttctgccaccattcttttccgtgcgttaggctatagtaaacaggat
attatccgtatcttttatccccttttaaaggtgcgctgtgtgggggaaaaatattatatc
ccctttgcagatattaatttggatcaacattttgattttgatctcaaagatgataagggt
aatgtgctcgttgttgccaacaaaaaactgagcaataaaaaggctagggatcttcgagca
agcaagattgagtgggtggaatatcctagtgatgtattgcgcaaccgctacttggccgaa
cctgttttaaatgcacaaggggaggtgttgttagatagtctcactctactagaaacctcc
aaattagaaaaaatccaagaggcaggcatcagtgaatttgtgatcgccaatgacttggcc
ttagggcatgatgtggccttgattcaatccttcttgggcgatgcggacgcattgcgcttg
cttagacagagtgaaaaaatcgaggatgagagtgccttagccgctattcgcatttacaaa
gtgatgcgcccgggcgatcctgtaacccctgatgtagctaaagcctatgtgcaacagctc
ttttttgaccccgagcgctacgacttaaccatggtggggcgcatgaaaatgaatcataag
ctccaagttaaagtgcccgattatgtaaccgtgctcacccacgaggacatcatcgccacc
atgaaatacctgatcaagattaagaatggacaggggcagattgacgatcgcgatcacttg
ggcaatcgtagaatccgtgcggtgggcgaactcttagctaatgagctccatgaaggcttg
atgaaaatgcaaaaaaccatcaaggataaattgagcaccatgaacaatgctttggaaagc
ttgatgccccatgatttagtcaattccaaaacgatcaccagcacgattttagaatttttc
atgagcggacaactctctcagtttatggatcaaactaacttactctcagaagttacgcac
aaacgccgtatttctgcattgggtgaagggggtttggttaaggatcgcgtgggctttgag
gctagagatgtgcaccccactcactacgggcgcatttgtcctattgaaacccctgagggg
caaaatatcgggttgatcaacaccctctctacctttacacgggtgaatgatttaggtttc
atcgaagctccctataaaaaagtgatcaatggtaaagtgagtgaggaggtggtctattta
accgccatccaagaagaagggcaggtgatcgctcctgctagcacgcgcatagacgcacag
ggttatattcaagatgactttttagaaacccgcgtgagtggggaaattgtcatgcgcgaa
aaagacaaggttaccttgatggatttaagctcgcgcatgcttgtgggcgtggcggcctct
cttattcctttcttagaacatgacgatgctaaccgcgccttgatggggaccaacatgcaa
cgccaagccgtgcccctcttaaaagcagaaactcctattgtggggaccggcattgagagc
attattgcgcgcgattcatggggaagtgtcaaagcaacgcgcagtgggattgtagaaaag
gtggattctaagaacatttatattttaggtgagggcgagcaaacctatattgatgcctac
ttattacaaaaaaatctacgcaccaaccaaaacacctgctttaaccaaactcccattgtc
aaggtaggcgatcgcgtgcaagctggacaaatcattgctgatggccctagcatggattct
ggcgaattggctttagggaaaaatatccgtgtggcgttcatgccttggaatggttacaac
tttgaagacgcgatcgtggtgagtgaaaaaatcactaaagacgatgtttttacctctgtg
cacatctatgaaaaagaggtcgaagcgcgcgaactcaaacatggcattgaggaatttacc
gcagacattcctgatgtcaaagaggaagaagtggcgcatttagacagcggagggattgta
aaaatcgggacttatgtcaatgctgggatgattctagtgggcaaagtgtcgcccaaaggg
gagatgaaaagcacgcccgaagagcgtttattgcgcgctatttttggggacaaggctggg
catgtggtgaacaaatcgctttactgccctccctctttagaaggggttgtgatcggagtg
catatccttaccaaaaaaggctatgaaaaggatgcgcgcgcggtgagtgcctatgaggag
gaaaaagccacgctagatattgaacatttcgatcgcttgaccatgctcaatagagaggag
cttttgcaaattagcgcgctcttttctaaagagcccctagaggagagcactaccctcaat
gacattacttatcctaaagggagcaaaatccccaaagatgtcgtgatggagatcaaccgc
tttggtttagcctctttggccaaaaaatataggaaggctgttcaagatcaatttgagcac
attaagaccaacttcttggagcagaaaaaaatcttaggccaagagcatgaagaaaagctt
tctattttagaaaaagatgacattctgcccaatggagtgatcaaaaaagttaagatttac
attgccactaagcgcaagctcaaagtgggggataaaatggctggacggcacggcaataag
ggcattgtgtctaatatcgtgcccattgccgacatgccctatactgccgatggcgaacct
gtagacattgtgcttaatcctcttggcgtgccaagtcggatgaacattgggcaaatccta
gaggtgcatttaggtttagtgggcaaacaattaggtggacaaattgacgcgttgctcaaa
agtcatactcaagatatgcttgctaaattgcgcgccaaaatgcttgagatcgcccatgtg
gtcaatatccaaaacgatagtctagccaaaatgctagaaaattgcccggatgaaaccttg
cttgcctatgcgcgggattggagttctggggtgaaatttgctatccctgtttttgaaggc
attagtgaggaacaattcaaacgcctctttgaactcgcccaaattgatccagatggtaaa
gtagagctttatgatggacgcacaggtgaaaagatgaaggagcgggtcaatgtgggctac
atgtacatgctcaaactccaccaccttgtagatgaaaaagtgcatgctagaagcacagga
ccttattctttggtaacccagcaacccgtaggaggtaaagcgctctttggaggccaacgc
ttcggggagatggaggtttgggctttagaatcctatggagcagcccataccctcaaagag
atgcttaccattaagtctgatgatattaaaggacgcgaaaacgcctataaagccgtagcg
cggggcgaacatgtgggcgagtctgaaatccctgagactttttatgtgctcactaaagag
ctgcaatctctaggcctagaagttagtatttttggggatgaagtcgatgaatttggcgcg
cccaagcccattgccatcaaagaagacgaacgccccaaagattttagctctttccaactc
accttagctagtccggataaaatcagggagtggagttatggggaggtcaaaaagcctgaa
accatcaattatcgcaccctcaagcccgagcgggatgggttgttttgtatgaaaatcttt
ggacctaccaaagattatgagtgcttgtgtgggaagtataaaaagcctcgctataagacc
attggaagctgtgaaaaatgtggcgtggcgatcaccagctctaaggtgcgctctttccgt
atggggcatattgagctagccactcccgtagcgcacatttggtatgtcaattcactacct
agccgtattggcacgctcttgggcatcaaaatgaaagacctagagcgcgtgctctattat
gaggcttatattgtgcaagaacccggagaggctttctatgatttagagaacaccaaaccg
gtatgcaaatatgacattctcaatgaagagcagtttcaaagtgtcgcgcgacgttatgaa
gatcatggttttgtagcccatatgggaggggaggtgattaaaaacctgcttgaggaattg
gatttggtgcatctactcaatagcctcaaagaagaagtcaagggcacaaattcagatgcc
aagaaaaagaagctcatcaaacgccttaaagtcgtagaaagctttttaaattccggcaat
cgccccgagtggatggtgctcactgctctgccagtcttgcctccggatctgcgtcctcta
gtagcactagatgggggtaaatttgctgtgagtgatgttaatgaattgtaccgccgtgtg
atcaaccgcaaccaacgcttgaaacgccttatggagctgggcgcgccagaaattatcgtg
cgtaatgaaaagcgtatgttgcaagaaagcgtggacgcgctctttgataacgggcgcaat
gctaatgcagttaaaggtgcgaacaaacgccctcttaaatccctctcagaaatcattaag
gggaaacaagggcgtttccgccaaaacttactaggtaagcgcgtggatttctcagggcgt
agcgtcatcgtggtaggtcccaatttacaaatggatcaatgtggtttgcccaaaaacatg
gcactagaactctttaaaccacatttgctctccaaattggaagaaaagggctttgcaacc
accctcaaacaagctaaacgcatgatcgagcagaaaaccaatgaggtttgggagtgctta
gaggaaattgtagatggctaccctgtcttgctcaaccgcgcgcccactctgcacaaacaa
tccattcaagctttccaccctaaactcattgatggcaaggcgatccagttgcacccgttg
gtgtgttctgcctttaatgcggactttgatggcgaccaaatggccgtgcatgtgccctta
agccaagaggcgatcacagaatgtaaggtcttgatgctcagttccatgaatattctctta
cctgcaagtggtaaggctgtggctgtgccaagccaagacatggtgcttgggatctattat
ctctccttagaaaaaaaggatgtgttgggcggacacaaaatcttttctggcgtggcggag
gtcttagtagccattgatgccaaagaattggatttacatgctaaagtgcgggttttgcaa
gaccgccatattcttgaaaccacggcaggccgtttagtcattaaatctattctacctgag
tttgttccaccccatttgtggaataaggtgatgaagaaaaaagacataggcgctttggta
gattttgtctataaagaaggagggatcggcaaaacagcgcagttcttggataatttgaaa
atgctaggtttccgctacgccactcaagcgggaatctcgatctccatagaggacattatt
acaccccacaacaaagcgcatttgatagaaaatgctaaagagcaggttaaggcgattcaa
gggcagtctgaggggggacatttaagcgaacaggaacgctacaataaaatcatcgacatt
tggacagaagtgaacgatgtgatgggtaaagaaatgatggaggctatcgctaaggataaa
caaggctttaactccatttatatgatggctgatagtggcgcgcgtggttcggcaacacaa
atcagacaactttcagcaatgcgtggattaatgaccaaaccagatggtagcattattgaa
acccctattatttctaactttaaagagggcttgaatgtgttggagtattttaactccacg
cacggggcgcgcaaagggctagcagataccgcgttaaaaactgccactgcggggtatttg
actcgtaaactcatcgatgttgcccaaaatgtcaaggtcgttcaagaggattgtggcaca
catgaaggcattgaaatcacggatattactgtggggagcgagctcatcgagcctttagaa
gagcgcatttttgggcgggttttagttgaagacatcatcgatcccctcaccaatgaaatt
ttgctcaatacagatactctaattgatgaggaaaaggctaagaaaattgtagaagcgggc
attaaatctgtaaccatccgcacccctattacctgtaaagcgcataaaggcgtgtgcgct
aagtgctatggcttgaatttgggtgagggcaagatggtcaaacccggggaagctgtgggc
gtagtggccgctcaatccatcggcgagcccggaactcagctcacattgcgcactttccac
gtaggtggaaccgcatcgcgtagccaagaggagcgcgaaatcgtggccaataatgaaggc
tttgtgcgcttctttaatgtcaagacttacaaaaacaaagagggaaaaaatatcattgct
aatcgccgtaacgcagcgattcttgtggtagaacccaagatcaaggctccctttgatggc
gaaatccgcattgataactctcatgaagaagtggtcttaagcgtgctcaatggagcgcaa
gaagcgcgttttgtattgcgcaaaagcgatgtggctaaacccaatgagttagctggggtg
agcggtaaaatcgagggtaaaatctacctcccctatggcagtggtcataaagtgcacaag
gggggcagtatcgctgatattattaaagatagttggaatgtgcccaaccgcatcccctac
gcctcagagatcacgattaatgataacgatccaatcactcaggatatctacgctaaagaa
aaaggcgtggtgaaatattacaaccttgtagacgatcacttggagcgcttcagggatatt
caagtgggggcagtggtttctgaaaaagggctttttgcggtggtagctgatgaaaacgat
cgcgaggcgatccgccactatatcgcccgcggttctgtcattgaaacaggtgataatagt
cctgtagagcccaagacattgctagtaaaagccaatcaggaggcaaaacatctcattgcc
acttgggacccttatagcacgcccattattgcggatataaaaggtaaagtgtattttcaa
gatatcgttcctggagtaagtgtaactcaggttgaggatcaaaacactaatattagcacc
atgaccgtcaatgactatatccccaatgatctaaaaccatgtttggtgattgaggcagaa
acaggggaggaaatcacctaccctctcgagtccaaaactgctattatggtcaatgatggg
gcgcaggtagaagtagcagatattttggctaaagtgcccaaagctacggctaagtctaag
gatattaccggtggtttgccccgtgtttcagatatttttgaggcgcgcaaaagtaagcct
aaagacaccgcaattctctctgaaaaagatgggatcgtgagctttggtaaagctgtgcgc
aataaagagcgggtggtgatcgaagctagcgatggaagtcgttcagaacattttgtagat
aaaggcaagaaaattttggtccaccccaacgaatttgtgcacgcgggtgaggcgatcaca
gagggggtggtgagcagtcatgacatcttgcgcattagtggagagaaagagttgcacaaa
tatattgtcagcgaagtgcaaaaggtgtatcgcggtcagggagtgaacattgcagacaag
cacatcgaaatcatcgtttcacaaatgttgcgccaagtgcgtatcttagacagcggggat
agtaagtttattgagggggatttggtgagcaagaagcactttagggaagaaaaccaacgc
gttttatctctcaaaggagagcccgccattgccgaacctgttttgcttgggatcacgcgt
gcggccattgggagcgatagcattatttctgcggctagcttccaagaaaccactaaagtg
ctcacagaggctagtatcgctatgaaaaaggacttcttggaggacttgaaagaaaatgta
gttttagggcgcatgattcctgtgggcacaggactttataaggataagcgtatctgtctc
caactcgaagaagtagagtga
DBGET
integrated database retrieval system
