Hippoglossus hippoglossus (Atlantic halibut): 117775244
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Entry
117775244 CDS
T07778
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117775244 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhip03400
]
117775244 (msh6)
DNA repair and recombination proteins [BR:
hhip03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117775244 (msh6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
117775244
NCBI-ProteinID:
XP_034464098
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Position
15:complement(14913164..14921474)
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AA seq
1382 aa
AA seq
DB search
MAKQSSLFSFFAKSPPPASKPKPKPSPSPTEADLPSSVEKSSSSPKEQARQQQQQAKSNR
VKPKSESRAAKGGFKKLFGDKAAAAKESSSTCSFSAGALVWAKLEGHPWWPCMVVPQPLT
GQQMRGRGRAQRIHVHFFDEPPTRGWVSTKYIRAYQGSDSSDAKTGGVFFSAKPVIQHAM
ELADGVMFDSPEKRIQMPLCTDPSDDEDEYEEEMEVDKSTLTDEELSDEDDQEHEEVKSS
KVSRRSSRASTEKSNKAKRRRIVVASDSDDSGDEFKPEQAASSSEDEEEEGTVSSEEEKE
EKEESMHESKVESPIKPAKRKRPEEKSASAKPKLATTPSAAPKRAPAAVAADTKSRLSAF
SAPDNFDSQANSSGSGGAATVWDHDKLEWLQDGRRKDKQRKRQSEDDYDPSTLYVPEDFL
NRNSPGMRRWWQLKSEMFDTVIFYKVGKFYELYHVDAVIGVNELGLTFMKGNWAHSGFPE
IGFGRFSDVLVQKGYKVARVEQTETPEMMETRCKTMFKPTKFDRVVRREVCRIITRGTQT
YSVLDGAPSESQSKFLLSLKEKAEEDSSGQCRTYGVCFVDTSVGYFHVGQFPDDRHCSRL
RTLIAHFAPVEVLFERGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDY
FKDTTGKEQGAGNHFLPPLLKKMTSESDSLCLTPKEGYEMALSALGGCIFYLKKCLVDME
LLSMANFEEYVPVDVEMEKAAGPASFFARTRQRMVLDGVTLANLEIFQNGSGGTEGALLE
RLDTCATPFGKRLLKQWLCAPLCNPTSVRDRLDAVEDLMGAQAQATEVSDLLKKLPDLDR
LLSKIHSIGTPLKGQDHPDSRAVLYEEVTYSKRKITDFLSALEGFKTMQEIVSILAPMTS
EFRSSLLRQVVSLKSENDGLFPDLSAELRRWETAFDHQKARTTGIISPKLGFDPEYDQSL
TGVKNCERELLDYLDRQKKRLGCKNMAYWGTGRNRYQMEVPDSFSDRKIPEEYEVKSTKK
GWKRYVTEETERMFSELQGIEEKRDAALKDCMRRLFFNFDKDYREWKTGVECMAVLDVLL
ALSRYSQDGDGPMTRPQLVLPEGNNQVAPFVDLVGSRHPCVTKTFFGDDFIPNDIFIGSD
ETDEERSPALCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFTRLG
ASDNIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVNELAEK
ICCRTLFSTHYHSLVEDYTNNPAVRLGHMACMVENECEDPSQETITFLYKFISGACPKSY
GFNAARLANLPEEVIQSGHRKAREFEKGTLSLRLFKKLCQFAEDATKGGTHFHSLVQMLN
NV
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctctctgttcagcttcttcgccaagtcgccgccgccggcctccaag
ccgaagccgaagcccagtccctctccgaccgaggcggacctgccctcctcggtggagaag
tccagctcgtccccgaaagagcaggcgagacaacaacaacaacaagccaagagcaaccga
gtcaaaccgaagagtgagtccagggctgcgaaaggtggattcaagaagctgttcggagac
aaggccgctgcagctaaagaaagcagctccacatgctcgttcagtgccggtgccctcgtg
tgggcaaaattggagggacacccttggtggccatgcatggtggtaccccaacctctgact
ggtcagcagatgagaggccgcggtcgagcgcaacgcattcacgtccatttcttcgatgaa
cctcccaccagaggatgggtcagcaccaaatatatccgagcgtatcaaggctctgacagc
agtgatgccaaaaccggcggggtgttcttcagcgccaagcctgtgatccaacatgcgatg
gaacttgctgacggagtcatgttcgacagccctgaaaaaagaatccagatgccgctctgc
acagacccatctgatgatgaagatgagtatgaagaagagatggaggttgacaaatcaact
ctaactgatgaagagctcagtgatgaggatgaccaggaacatgaggaagtgaagtcatcc
aaagtcagtcgccgttcatcccgggcttcaacagaaaagagcaacaaggccaagcgacgt
cgcattgttgttgcctcagacagtgacgactcgggtgatgaatttaaaccagaacaagct
gcttccagcagtgaggatgaagaggaagaaggaacagtgagtagtgaagaggagaaagag
gagaaagaggagagcatgcatgagtccaaggtagaaagccccatcaagcctgcgaagcgc
aaacgtcctgaagaaaagtcggctagtgcaaaacccaaactggcaactaccccatctgct
gcgcctaaacgagctccagcagctgtcgctgcggacacaaagtcacgtttatccgccttc
tctgcccctgacaactttgacagccaagcaaatagttcaggcagcggtggagcagcaaca
gtttgggaccatgacaaactggaatggttgcaggacggccggaggaaagacaagcaaagg
aagcgacagtccgaggatgactacgacccttccaccctgtacgtgcctgaagactttctg
aacagaaactctccgggtatgcgtcggtggtggcagctcaaatctgagatgtttgataca
gtcatcttctacaaggtgggcaagttttatgagctgtaccacgtggacgctgtgattgga
gtcaacgagctgggactgaccttcatgaaggggaactgggcacactcgggttttccagag
attggctttggccgtttctcggacgtactggtccagaaaggctacaaggtggctcgagtg
gagcagacagagaccccggagatgatggaaactcgctgtaagaccatgttcaagcccaca
aaatttgaccgtgtggtgagaagagaggtgtgccggattatcactcgcggaacccaaacc
tacagtgtgttggacggcgccccctcagagagtcagagcaagttcctgctgagtttaaag
gagaaggcagaagaggacagctctggtcaatgtcgcacctatggagtctgctttgtagac
acgtctgtgggttattttcacgtgggtcagttcccagacgatcgtcactgctcacgcctg
cgcaccctcatagcccactttgcaccagttgaggtgctctttgaaagggggaacccgtcc
gtcgaaacacgcaaaatactgaaggcctctctatcctctgctctgcaggaagggcttaac
gcaggaacgcagttctgggacgcacagaagacccttaaaaccctctcagaggaagactac
ttcaaagataccacaggcaaggagcagggggctggaaaccactttctgcctcctcttttg
aagaagatgacctctgagagtgattcactgtgcctcactcctaaagagggctacgagatg
gctctctcagcactgggtggatgcattttctacctgaagaaatgtctggtagatatggag
ctgctctccatggccaactttgaggaatacgtccctgtcgacgttgagatggagaaagct
gccggacccgccagtttctttgcccggactcgtcagcgaatggtcctcgatggagtgacg
ctggcgaacttggagatctttcagaatgggtcaggaggaaccgagggggcgctactggaa
cgtttggacacatgcgctaccccatttggcaagaggctgctgaagcagtggctctgtgct
ccgctgtgtaacccaacatccgtgagggacagactggatgccgttgaggacctgatggga
gctcaggcccaggctactgaggtctcagacctgctgaagaaactcccagacctggaccgt
ctcctgagtaaaatccacagcattggaactcctctgaagggccaggaccaccctgacagc
agagcggttctctatgaggaggtcacctacagcaaacgcaagataacagacttcctctct
gcactggaaggtttcaaaactatgcaggaaatcgtttctatccttgctcccatgacgagt
gaatttcgctcctcgctgctccgtcaagttgtcagtctgaaaagtgagaacgacggcctc
tttcccgacctctctgccgaactccggcgctgggagacggcttttgaccaccagaaagcc
cgcaccaccggtatcataagcccaaaacttggctttgacccagagtacgaccaatccctg
accggggtcaagaactgtgaacgagagctgctggattacctggacagacagaagaagagg
cttggctgtaaaaacatggcctactggggaacaggaaggaaccgctaccagatggaggtg
cccgacagcttctccgatcggaaaattcctgaagagtacgaggtgaagtctacaaagaaa
ggctggaagcgctacgtgacagaggagactgagcggatgttttcagagctgcaaggaatt
gaggagaagagagacgctgccttgaaagactgcatgaggaggctcttcttcaactttgac
aaagactacagagagtggaagactggtgtcgagtgcatggcagtgcttgatgtactgctg
gccctgtcacgctacagtcaggatggagacggaccgatgaccaggccgcagctggttctc
cctgagggtaacaaccaggtagcgccctttgtggacctcgtcggatcccgccacccgtgt
gtcaccaagaccttctttggtgacgacttcattccaaatgacatctttatcggcagcgac
gaaactgacgaggagagaagtcccgcgttgtgtgtccttgtcacgggaccaaacatgggt
ggaaagtccactctcatgagacagtgtgggcttgtgatcatcctggctcagctgggttgc
tacgttcctgctgagagcctgcgcttcacaccagttgacagagtcttcaccagactggga
gcctctgataacattatggctggagagagcaccttctttgtggagttaagtgagactgcc
agcatcctgcaccatgccaccaagcattcactcgtgctcctggatgaattaggaaggggc
acagccacatatgatggcacagcgattgccagtgctgttgtgaatgaactcgctgagaag
atctgctgtcgcaccctcttctccacacattaccactccctggtggaggattacaccaac
aaccctgctgtgcggttgggccacatggcctgtatggtggagaatgaatgtgaggatcca
agtcaggaaaccattacattcctctacaagttcatcagcggtgcttgtcccaagagttac
ggcttcaacgctgctcgacttgcgaacctcccagaggaggtcatccagtcaggacacagg
aaggccagagagtttgagaagggcaccctgagcctcagactgttcaagaagctctgccag
ttcgctgaagatgccactaagggcggcacacactttcattcccttgttcagatgctcaac
aatgtgtag
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