Heterobasidion irregulare: HETIRDRAFT_60173
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Entry
HETIRDRAFT_60173 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
hir
Heterobasidion irregulare
Pathway
hir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HETIRDRAFT_60173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_60173
Enzymes [BR:
hir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
HETIRDRAFT_60173
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
HETIRDRAFT_60173
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_N
CLP1_P
Clp1
AAA_16
nSTAND3
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
20678500
NCBI-ProteinID:
XP_009541831
JGI:
Hetan2_60173
UniProt:
W4KJS9
LinkDB
All DBs
Position
Unknown
AA seq
515 aa
AA seq
DB search
MSQSQSQSQSQSQSQPQSDPTASKEWVLEPETEYRFELDPGTSVAIKLADGQAEVFGAEL
VEGKTYLFGHECKAAVFSWQGCTLQVVGHPSTEYVSEETPMHAYANVHLALESMRVRALR
ALHGSPVLSPAPAPGRSSSGDTERADPPRVLVLGPENSGKTSVCKILANYAVRAGQGWAP
IYVNVDPAEGGWAVPGAISAASVPGPIPTATPASPLGSAATSAPTVLASNALVPLAYWYG
HPEIRRNPLLVDRLVRNLGENVNDRLEADPQGRAAGVIVDTPSSFASSSGSASADHRSML
IKACVDAFRINTILVVGHEKLNVEMQRAYGDRMTVVKIPKSGGVVELDASYRQRVHTYQM
HHYMYGPPLVPPPGVPYGTASAGGETALDMHLAPSSSVIGFDELTIYRIGEESMAPSSAL
PIGATRTVSEMQPVKIDPASHASGLLNAVLALLAPPYHDDEAERYDEEVLDLHVVGFLAV
TSVDVPNRRMTVLSPSPGSFAGRTAVIGSFEWSEQ
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagtcccagtcccagtcccagtcccagtctcagtcccagccccagtctgatccc
acggcgtcgaaggaatgggtgctcgagcccgagactgagtacaggttcgaactggacccc
ggcacgtccgtcgcgatcaagctcgcggatggccaggcggaggtcttcggcgccgagctc
gtcgagggcaagacgtacctcttcggccacgagtgcaaggccgccgtcttctcgtggcaa
ggctgcaccctccaggtcgtaggccacccctccacagaatatgtatccgaggagacgccc
atgcacgcctacgccaacgtccacctcgccctcgagtccatgcgcgtccgcgccctccgc
gccctccacggctcccccgtcctatcccccgcacccgcacccggccgcagcagcagcggt
gacacggagcgcgccgacccgccgcgcgtgctcgtcctcgggcccgaaaactcgggcaag
acgagcgtgtgcaagatcctcgccaactacgccgtgcgcgccggccagggctgggccccg
atctacgtcaacgtcgaccccgcagagggcggctgggccgtccccggcgcgatctccgcc
gcctccgtccccgggcccatccccaccgcgacccccgcgagccccctcggctccgccgcg
accagcgcgccgaccgtgctcgcctccaacgccctcgtccccctcgcctactggtacggc
caccccgagatccgccgcaaccccctcctcgtcgaccgcctcgtccgcaacctcggcgag
aacgtcaacgacaggctcgaggccgacccccaggggagagcggcgggcgtcatcgtcgac
accccgtcctcgttcgcctcttcttctggctccgcgagcgccgaccaccggtcgatgctc
atcaaagcctgcgtcgacgcctttcgaataaacaccatcctcgtcgtcgggcacgaaaaa
ctcaacgtcgagatgcagcgcgcgtacggcgaccgcatgaccgtcgtcaaaatcccaaaa
tccggcggcgtcgtcgagctcgacgcgtcctaccgccagcgcgtacacacctaccagatg
caccactacatgtacgggcccccgctcgtgcccccgcccggcgtcccgtacggcaccgcc
tccgcgggcggcgagaccgcgctcgacatgcacctcgccccgagcagctccgtgatcggc
ttcgacgagctcacgatctaccgcatcggcgaagaatcgatggcgccctcttcggcgctg
cccatcggcgcgacgcgcaccgtgtccgagatgcagcccgttaagatcgacccggcgtcg
cacgcctcgggcctgctcaacgcggtgctcgccctcctcgcgccgccgtaccacgacgac
gaggcggagcgctatgacgaggaggtgctcgacctgcacgtcgtcgggttcctcgccgtg
acgagcgtggacgtgccaaatcggcggatgacggttctctcgccgagcccagggtcgttc
gcgggccgcacggcggtcatcggctcgttcgagtggtccgagcagtga
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