Halobiforma lacisalsi: CHINAEXTREME01780
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Entry
CHINAEXTREME01780 CDS
T04669
Name
(GenBank) tRNA modifying enzyme
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
hlc
Halobiforma lacisalsi
Brite
KEGG Orthology (KO) [BR:
hlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hlc03016
]
CHINAEXTREME01780
Enzymes [BR:
hlc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
CHINAEXTREME01780
Transfer RNA biogenesis [BR:
hlc03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
CHINAEXTREME01780
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM
SPL
SH3_15
Motif
Other DBs
NCBI-ProteinID:
APW96576
UniProt:
M0LI96
LinkDB
All DBs
Position
complement(390459..391712)
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AA seq
417 aa
AA seq
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MARYHIETYGCTSNRGESREIERRLRDAGHYRVDGPEEADVAILNTCTVVEKTERNMLRR
AEELSDETADLYITGCMALAQGEEFAEADVDGRVLHWDEVPEAVTNGECPTTTPDVEPIL
DGVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALVHAGAKEIRITGQDTG
VYGWDEGERKLHRLLERICEIDGDFRVRVGMANPKGVHGIREELAAVFADNEELYDFLHA
PVQSGSNDVLGDMRRQHQVGEYLEVVETFDDRLDYWTLSTDFIVGFPTETEDDHRQSLEL
LRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSALKREIVSEVYESMVGQRR
EDCLVVEEGTADSVKCRDSAYRQIIVQNADDHGLEPGDFVDLEVTAHETMYAFGEPI
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggcccggtaccacatcgaaacctacggctgtacgtctaaccgcggggagagccgcgag
atcgagcggcggctccgcgacgccggccactaccgggtcgacggccccgaggaggccgac
gtcgccatcctcaacacctgcaccgtcgtcgagaagaccgagcgcaacatgctccggcgg
gccgaagaactctccgacgagaccgccgacctctacatcacgggctgtatggccctcgct
cagggtgaggagttcgccgaggccgacgtcgacggtcgggtgctccactgggacgaggtc
cccgaggcagtcaccaacggcgagtgtccgacgacgacccccgacgtcgaaccgatcctc
gacggcgtcgtcggcatcctcccgatcgcccggggctgtatgtccgactgttcctactgc
atcacgaagaaggccaccggcaagatcgactctccgtcgatcgaggagaacgtcgagaag
gcccgcgcccttgtccacgccggcgcgaaggaaatccgcatcacgggccaggacaccggc
gtctacggttgggacgagggcgagcgcaagctccaccgcctgctcgagcgcatctgcgag
atcgacggagacttccgcgtccgcgtggggatggccaacccgaagggcgtccacggcatc
cgggaggaactcgccgcggtcttcgcggacaacgaggagctgtacgacttcctgcacgcg
cccgtccagtccggttcgaacgacgtgctcggcgacatgcgccgccagcaccaggtcggg
gagtacctcgaggtcgtcgaaaccttcgacgaccgtctcgactactggacgctctcgacg
gacttcatcgtcggctttcccaccgagaccgaggacgaccaccggcagtcgctcgaactc
ctgcgggagacccggccggagaagatcaacgtcacgcgcttctccaagcggccgggcacc
gacgccgccgagatgaagggcctcggcggtaccgtcaagaaggaacgctcgaaggagatg
agcgccctcaaacgcgagatcgtgagcgaggtctacgagtcgatggtcggccaacggcgc
gaggactgtctcgtcgtcgaggaggggaccgccgactccgtgaagtgtcgggattcggcg
taccgacagatcatcgtccagaacgccgacgaccacggcctggagcccggcgacttcgtc
gacctcgaggtgacggcccacgagacgatgtacgcgttcggggaaccgatctga
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