Hydrogenovibrio marinus: HVMH_0040
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Entry
HVMH_0040 CDS
T06677
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hmar
Hydrogenovibrio marinus
Pathway
hmar03030
DNA replication
hmar03410
Base excision repair
hmar03420
Nucleotide excision repair
hmar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HVMH_0040
03410 Base excision repair
HVMH_0040
03420 Nucleotide excision repair
HVMH_0040
03440 Homologous recombination
HVMH_0040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmar03032
]
HVMH_0040
03400 DNA repair and recombination proteins [BR:
hmar03400
]
HVMH_0040
Enzymes [BR:
hmar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HVMH_0040
DNA replication proteins [BR:
hmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HVMH_0040
DNA repair and recombination proteins [BR:
hmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HVMH_0040
NER (nucleotide excision repair)
GGR (global genome repair) factors
HVMH_0040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_2
Motif
Other DBs
NCBI-ProteinID:
BBN58446
LinkDB
All DBs
Position
38474..41287
Genome browser
AA seq
937 aa
AA seq
DB search
MTAMQLEFNPKAPFILVDGSSYLFRAFHAMPPLTNSKGHATGAIFGVINMIGKLLEQYQP
ERIAVVFDAKGKNFRHEMYEEYKAHRPPMPDELRIQIEPIHQIIKALGIPLLVIDGVEAD
DVMGTLAQQATEAKMDALLSTGDKDMAQLVNEHITLINTMNDTLMTPEKVLEKFHVKPEQ
IIDYLALMGDSSDNIPGIPKCGPKTAAKWLEEYGTIENLINHADEIKGKIGESLRDNLDQ
LKLSQQLTTIRIDCDLPVHLSDIKRHTPDVQALAELFAEYDLRNWQGQIAKGQLPFSKFT
GRKAHSATLVSEHNGKHHSNPAQPATSENFEIAPYETILDESTFEQWLTKLKEADCFAID
TETTSLDTMIAQIVGISFAYESSGKIHAAYVPLKHDYEGAPNQLDFEQALSRLKPILESE
QIQKVGQNLKYDWHVFMNHGIELKGIAYDTMLESYCLNSVATRHNMDDLALKYLNHSTIH
FEDIAGKGKNQLTFNQIPVEQAAPYAAEDADITLRLHFTIWPQLKKDEGPCRIFKDIEMP
LLTVLAKTERNGVLIDKQMLADQSYEIGEKLVQLEQDAHLIAGTPFNLNSSKQLQEVLFD
RLNLPVLKKTPKGQPSTAEPVLAQLADEGHELPTLILEYRSLAKLKSTYTDSLPKQINEK
TGRVHTSYQQAVASTGRLSSTEPNLQNIPVRNAEGRRIRQAFIAPKGYKIVAADYSQIEL
RIMAHLSGDANLVTAFTEGKDIHQATAAEIFGMPLESVTSEQRRSAKAVNFGLIYGMSAF
GLAKQLNIPRNLAQEYINLYFSRYPSVQTYMESTQANARENGYVETLLGRRLYLPDINAK
NGQLRQYAERTAINAPMQGTAADIIKRAMIDIQKWLDTSDLNLKMLMQVHDELVFEVAEK
DIEAAQPEIKRIMEAALSLDVPLIVEVGQGDNWDEAH
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaatgcaacttgaattcaatccaaaagcgccctttattctcgtagacggttct
tcttatctattccgcgcttttcacgccatgcctcctttgacaaattccaaaggtcatgcc
actggcgcaattttcggtgtgatcaatatgatcggaaaattgttggagcaatatcaacct
gaacgcattgccgtggtattcgatgccaaaggcaagaacttccgtcatgaaatgtatgaa
gagtacaaggcgcatcgcccaccgatgccagatgaactgagaattcaaatagaaccgatt
caccaaattatcaaagcgttaggaatccctcttttggtgattgacggtgttgaagccgat
gatgtcatgggaacccttgcacaacaagccactgaagcgaaaatggacgctctattgtca
acgggtgataaagatatggcgcaactggtgaatgaacatatcacccttatcaacactatg
aatgacacgttgatgacaccggaaaaggtgttggaaaagtttcatgtgaaacctgaacaa
ataatcgactaccttgccttgatgggcgacagctcagacaatattccaggaattccgaaa
tgcggtccaaaaacggcggcaaagtggctggaagagtacggcaccatcgaaaatttgata
aaccatgccgacgaaatcaaggggaaaattggggaaagtctgcgagataacttggatcaa
ttaaaactgtcacaacaattgacaacaatccgcattgattgcgatttgccggttcacctc
agtgacatcaaacgccatacacccgatgtccaggcattggcagaactttttgccgagtat
gacctacgaaactggcaaggacaaatcgcgaaaggccagcttccattcagcaagttcaca
gggcgcaaagcgcatagcgcaaccctggtcagtgaacataatggcaaacaccactcaaac
ccagcccagcctgcaacatcagaaaacttcgaaatcgcgccctacgaaacgattttggat
gaaagcacttttgaacaatggctgacaaaacttaaggaagccgattgtttcgccatagat
actgaaaccacctcattagataccatgatcgcccaaatcgtcggtatcagttttgcatac
gaatcatctggcaagattcacgcggcttatgttccgttaaagcatgactatgagggtgcg
cctaaccagctggatttcgaacaagcactcagccgcctgaaacctattttagaaagtgaa
caaatccagaaagttggacaaaacctgaaatatgattggcatgtttttatgaatcatggc
attgaactaaaggggattgcctacgacaccatgttggaatcctattgtttgaacagcgtg
gcaacgcgtcacaatatggatgacttggctttgaaataccttaaccatagcactatccat
ttcgaagacatcgctggtaagggcaaaaatcaactgacattcaaccaaattcctgttgag
caggctgcgccttatgctgcggaagatgccgatattactttgcgactgcatttcactatt
tggccacaactgaaaaaagatgaagggccttgccgcattttcaaagacattgaaatgcct
ttgttaacggtcttggcaaaaaccgaacgtaacggtgtactcatcgacaagcaaatgctc
gccgatcaatcttatgagattggtgaaaaactggttcaacttgaacaagatgctcacttg
attgcaggaacgccattcaacctgaattcttccaaacagctacaagaagtactgtttgat
agattgaatctacccgttttgaaaaagacaccaaaaggccaaccctcaactgcggaacct
gttttagcgcaactggcagatgaaggtcacgaattaccaactttgattttagaataccgt
agcttggcaaaattgaaatccacctacaccgatagtcttccaaaacaaatcaatgaaaaa
accgggcgcgttcatacttcttatcagcaagcggtggcttcgactggacgcttatcgtct
acggaaccaaatttgcaaaacatccccgttcgtaatgccgagggtcgtcgtattcgccaa
gcgtttattgcaccgaaggggtataaaatcgttgccgcagattactcgcaaattgaactc
cgcatcatggcacatttatcaggagacgccaatttagtcacagcattcactgaagggaaa
gatatccaccaagcaactgccgcagaaatttttggtatgccacttgaaagtgtcactagc
gaacagcgtcgtagtgccaaagcagtgaacttcggattaatttatggtatgtccgcattt
ggcttggcaaaacagttgaatatccctagaaatctagctcaggaatacatcaacctgtat
ttcagccgctaccccagcgtgcaaacctatatggagagtacccaagcgaatgcgcgtgag
aacggttatgttgaaaccttattggggcgccgtctttatttgcccgacatcaatgctaaa
aatggtcaactacgtcaatatgccgaacgtacagctattaacgcgccgatgcaaggcacc
gctgccgatattattaaacgtgcgatgattgatattcaaaaatggttagatacgtccgat
ttgaacctcaaaatgttgatgcaggtacatgatgaattggtttttgaagttgcagaaaag
gatatagaggctgctcaaccggagatcaaacgcataatggaagccgctttatcactagat
gtgcctttgattgttgaagtcggtcaaggtgacaactgggatgaggcgcattaa
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