Hydra vulgaris (swiftwater hydra): 100197448
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Entry
100197448 CDS
T01080
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100197448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100197448
Enzymes [BR:
hmg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
100197448
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100197448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
MMR_HSR1
AAA_24
AAA_18
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
100197448
NCBI-ProteinID:
XP_012559163
UniProt:
A0A8B7DMR6
LinkDB
All DBs
Position
7:31952700..31964183
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AA seq
430 aa
AA seq
DB search
MDSEGQFPVNSPPRKEWLLEIDNELRIEVASGNEAKITITDGHAEIFGTELVRNKQYTFR
SKSKIAIYTWHGCTVEVLGELEVGYISAETPMIIYLNVHMALEQMRQKVEKQQSGLKIGP
KVVICGPVNVGKSTLSRILLNYGVRMGRRPIFVDLDVGQGSIAVPGSMGALLVERPADAE
EGFSLQTPLVYNFGHTTPSDNIKLHDALVSQLADVVFKHFEHNPKAAVSGFIINTCGWVT
GGGFKILMNVVKSFKVDVVLVIDHERVYNDFKTNLGDTVQCVHLPKSGGVFERSQSQRSH
ARDERIREYFYGGRTPLYPHVFDVKFDEIKVYMIGAPDVPDSCLPLGMEQEDNSMKAVPL
SINTDLLHSLCAVSTASSQDEDFAKSNVAGFIVITNVDVESKTLTVLSPAPRPLPKEYII
KTGIKFMDLK
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggactcagaaggtcaatttccagtcaatagcccaccacgtaaagaatggttattagaa
attgacaatgagttaagaatagaagtggcctctggaaatgaagcaaaaataacaattact
gatggccatgcagaaatatttggtactgagttggttcgaaacaaacaatatacatttaga
agcaagtcaaaaattgctatatatacctggcatgggtgcacagttgaggttttaggtgag
cttgaggtagggtatatatctgctgaaacaccaatgataatatacttgaatgttcatatg
gctttggagcaaatgagacaaaaggttgaaaagcaacaaagtggtttgaaaattggtccg
aaggtagtaatttgtggacctgtaaatgttggtaagtctactttgagtagaatacttttg
aactatggcgtacgcatgggaagacggcctatttttgttgatcttgatgtaggccaggga
agtattgctgttccaggatcaatgggagcattacttgtggaaagaccagcagatgcagaa
gaaggcttttctctgcaaactcctttagtttacaattttgggcatactacacctagtgat
aatattaagctgcatgatgcattggtatctcaattggctgatgttgtttttaaacatttt
gagcacaatccaaaagctgctgtcagtggttttataataaatacttgtggatgggttact
ggtggtggcttcaaaattcttatgaatgttgtaaaatcatttaaagtggatgttgtactg
gttattgatcatgaaagagtatacaacgactttaaaacaaatcttggagatactgtacaa
tgtgttcatttgccaaaatctggtggtgtttttgaaagatcgcaaagtcaaagaagtcat
gcgcgtgatgaaagaataagggagtacttttatggtggtcgcacacctttatatccacat
gtgtttgatgttaagtttgatgaaataaaagtgtacatgataggcgcaccggatgttcct
gattcctgccttcctctaggcatggagcaagaggacaacagcatgaaagctgttccacta
tcaattaacactgatttattgcattctttatgtgctgtaagcacagcaagctctcaagat
gaagattttgcaaaatcaaatgtagctggcttcattgttatcacaaacgttgacgtagag
tcaaaaacattaacagttttatcacctgctcctcgaccattaccgaaagaatacatcata
aaaactggcattaagttcatggatttaaagtaa
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