Hydra vulgaris (swiftwater hydra): 100204515
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Entry
100204515 CDS
T01080
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03020
RNA polymerase
hmg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100204515
09124 Replication and repair
03420 Nucleotide excision repair
100204515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmg03021
]
100204515
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100204515
Enzymes [BR:
hmg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100204515
Transcription machinery [BR:
hmg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100204515
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100204515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
100204515
NCBI-ProteinID:
XP_047130973
LinkDB
All DBs
Position
4:42873036..42919222
Genome browser
AA seq
2038 aa
AA seq
DB search
MPGPTTQVHSSAPLRLVKKVQFGVLSPDEIRRMSVTDGGICYAETMEAGKPKLCGLMDPR
QGTIDRMTRCQTCAGNMTECPGHFGHIELSKPVFHIGFLTMTIKIMRCFCFYCSKLLVDK
NHPKLLEILSKTKSQPKKRFQHVYDLCKGKSICEGGDIMDQQFDANLANNEEQAEKKGHG
GCGRYQPQIRRQALDLTAEWKNVNEDSQEKKISLTAERVHEIFKRITDEECDILGMDAKF
CRPDWLIVTVLPVPPLSVRPAVVMNGSARNQDDLTHKLADIIKANNQLKRNEMNGAAAHV
IAQDLMMLQFHVATLTDNELPGLPRAQQKSGRPLKSIKQRLKSKEGRLRGNLMGKRVDFS
ARAVITPDPNLDIDQVGTPKTIAMNLTYPEIVTPFNIDRLQELVRRGPTHYPGAKYIIRD
NGERIDLRFHPKTSDLHLQFGYKVERHIIDNDVVVFNRQPTLHKMSMMGHRVKVLPWSTF
RLNLSVTTPYNADFDGDEMNMHVPQSMETRAEITEILMVPRQIITPQSNKPCMGIVQDSL
CAVYKFTKRDVFLEKDVVMNLLLWIRKWDGKFPIPAILKPKPLWTGKQIFSLLIPPGINH
SGEHSAHPDDESNGPYCHISPGDTKVLIEDGTLISGIICKKTVGPSGNSLVHIIMAEEGP
EIAKEFYGDLQKVTNNWFLVEGHSIGIGDCIADQDTYADIQNTIKKSKQEVNEVIEQAHT
NQLEPTPGNSLRQTFENKVNRILNECRDKTGASAQKSLSVFNSFKSMVVAGSKGSNINIS
QIIAVVGQQNVEGKRIPFGFRHRTLPHFNKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTSETGYIQRRLIKAMESVMVAYDGTIRNSNRYIIQLCYGEDGMAGERIE
GQELSSIKPSNAMFNRMFYFDISNERRLKNVLNEDVLRNIYSDSTTTNAIEEEFRQLKDD
REMLRNIFPNGNKKVNLPVKLSRLIWNSQKMFKVNLRAQTDLSPLKVINDIKDLTKRLLV
VKGEDKLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQ
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVF
LLGQAARDAEHAKDVLCRLEHTTLRKVTANTAIFYDPDPQNTVIAEDQDFVNVYYEMPDF
DPARMSPWLLRIELDRKRMTDSKLSMEQIAEKINQGFGDDLNCIYNDDNAEKLVLRIRIM
GSGDDSKNMEDEEQLDKMEDDVFLRCIEANMLTDMTLQGIESIAKVYMHLPSEESKKRVI
FNAEGEFKHLQEWILETDGNGLMKVLSQKDIDPVRTTSNDICEIFSILGIEAVRKSIEKE
MDHVISFDGSYVNYRHLSLLCDIMTSKGHLMAITRHGINRQEVGCLMRCSFEETVDVLVE
AAFHAEADNLRGVSENIILGQLPPIGTGCFNLMLDAEKCKEGMEIPLNIGEGHGMMPGGG
VFFGSAASPSNAMSPQMTPWNQGHTPGYGDGWSPALGSGMTPGAASFSPSAHSDASGFSP
AGGFSPAWSPQDSMSLGSPDSSPYIPSPSRNVMSPSYSPNSPAFNPQSPAMSPSSPGYSP
TSPLYSPTSPGYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPIYSPTSPSYSPT
SPSYSPTSPSYSPTSPKYSPTSPSYSPTSPSYSPSSPQYSPTSPAYSPQSPSYSPSSPSY
SPTSPKYSPTSPKYSPTSPKYSPTSPSYSPSSPSYSPSSPNYSPTSPTYSPTSPTYSPTS
PAYSPTSPAYSPTSPAYSPTSPVYSPTSPAYSPTSPKYSPTSPKYSPTSPIYSPTSPAYS
PTSTGYSPTSPEYSPSSPKYSPTTPQYSPTSPKYSPASPTYSPSTPTDKSVGSINYSPLE
PDYSPGTPTYSPDGTPTYSPDGRGFSGTAAKNISPMDYSPSSPSGPGTPEETLKFKKR
NT seq
6117 nt
NT seq
+upstream
nt +downstream
nt
atgccaggtcccacaacccaagtacattcaagtgcaccactgagattggtgaaaaaagtt
caattcggtgtactcagtcctgacgaaataaggcgtatgtctgttactgatggaggaatt
tgttatgctgaaactatggaagcaggcaaaccaaaactatgtggtctaatggatcctcgt
caaggtactattgatagaatgactcgatgtcaaacatgtgctggtaacatgactgaatgt
ccaggtcattttggtcatattgagctttcaaaacctgtcttccatattgggttcttaaca
atgaccataaagattatgagatgcttttgcttctactgctcaaaattattagttgacaaa
aatcaccccaaactgttagaaatcctatcaaaaactaagtcacagccaaaaaaaagattt
caacatgtctatgatttatgtaaaggtaaaagtatttgcgaagggggagatataatggat
caacagtttgatgcaaatctggcaaacaatgaagagcaagcagagaaaaaaggtcatggt
ggatgcggtcgttatcaaccgcaaattagaagacaagctctggatttaacagcagaatgg
aagaatgtaaatgaagattctcaagagaaaaaaatatcactgactgccgagcgtgtccat
gaaatttttaaacgtattacagatgaagagtgtgatatattaggaatggatgcaaagttt
tgtagacctgattggcttatagttactgttcttccagttcctccattgtcagttagacca
gctgttgttatgaatggtagtgccagaaaccaggatgaccttactcataaacttgcagat
attatcaaggcaaacaatcagttaaaacgcaatgaaatgaatggtgcagctgctcatgtt
attgcacaagacttgatgatgctgcaattccatgttgcaacactaactgataatgagctc
cccggccttccaagggcgcaacaaaagtctgggagacctttaaaatcaatcaagcagcga
ttaaagagtaaagaaggtcgacttagaggaaatttaatggggaaacgagttgatttttca
gcacgtgctgtcattactcctgatcctaatttagacattgaccaagttggaacacctaaa
acaattgcaatgaatctaacatatcctgaaattgtgacaccttttaatatagacagatta
caagaacttgtacgtcgtggacctactcattatcctggggctaaatatattattcgtgat
aacggtgaaagaatagatttacgttttcatccaaaaacaagcgatcttcatttacagttt
ggatataaggttgaaagacatattattgataatgacgttgttgtttttaatcggcaacct
acccttcacaagatgagtatgatgggtcatagagtaaaagttcttccatggtctactttt
cggttaaatttaagtgtaaccactccttataatgctgattttgatggagatgaaatgaac
atgcatgttccacaatcaatggaaacacgtgcggaaattactgaaattttaatggtgcca
cgacaaattataacaccacagtcaaataaaccttgtatgggtatagtgcaagattcatta
tgcgctgtttataagtttactaaaagagatgttttcttggaaaaagatgtggttatgaat
cttttattgtggattagaaaatgggatggaaagtttccaatacctgctatactcaaacct
aagccattgtggactggaaaacagattttttctttattaattccaccaggaattaatcat
tctggtgagcattctgcacatcctgatgatgagtcaaatggaccttattgtcacatatct
cctggagacacaaaggtattaattgaagatggtactttaatatcaggaattatttgtaaa
aagactgttggaccatcaggaaactctttagtacatatcattatggctgaagaaggacct
gagattgcaaaggagttctatggtgatttacaaaaagtgaccaataattggtttctagtt
gaaggacacagtattggtatcggagattgcattgctgaccaagacacgtatgcagatatt
caaaataccattaaaaaatcaaaacaagaagtaaatgaagttattgagcaggcacatact
aatcaattagaacctactcctggtaactctcttcgtcaaacttttgaaaataaagtaaac
agaattttgaatgaatgtcgtgataaaacaggtgcaagtgctcaaaaaagtttatctgta
tttaacagcttcaaatctatggttgttgctggctctaaaggttcaaatattaatatttca
cagattattgcagttgtaggtcagcagaatgttgaaggtaaacgtataccatttggattt
cgtcatagaacacttcctcactttaacaaggatgattatggtcctgaatcccgtggtttt
gttgaaaattcctatcttgctggccttactcctacagaattcttttttcatgcaatggga
ggtcgagaagggttaattgatacagctgtaaaaacctctgaaacaggatatattcagaga
agattgataaaagctatggagagtgttatggtagcttacgatggaactattcgaaattca
aatcgatatattatccagctctgttatggtgaagatggaatggcaggtgagcgcattgaa
ggacaagaattatcatcaatcaagccatcaaatgcaatgtttaatcgaatgttttatttt
gatatcagcaatgaacggcgactaaagaatgttttaaatgaagatgttttaagaaatatt
tactcagattctacaacgactaatgcaattgaggaagagtttcgtcaattgaaagatgat
cgtgaaatgctgagaaacattttccctaacggaaataaaaaggttaacttacctgtcaaa
ctatctagactgatatggaattcacaaaaaatgtttaaagttaatcttagagctcaaact
gatctttctccattaaaagtgatcaatgatattaaagatttgaccaagaggttgctggtt
gtaaaaggtgaggacaaattaagcaaagaagcacagctaaatgctactatgttgtttcaa
attcatctgcgttcaactttatgttcaaagcgggttattgaagaatttagattaacatca
gaggcttttgattggttgttaggtgaagtagaatcgcgttttaatcttgcacaggcacaa
ccaggtgaaatggttggtgctttagcagctcaatctcttggtgaacctgcaactcagatg
accttaaatacttttcattatgctggtgtttctgcaaaaaatgtaacattaggtgtccca
cggttaaaagaaatcataaatgtttctaagaaacccaaaactccttcccttacagttttc
ctacttggtcaagctgcaagagatgctgaacatgctaaggatgtcctttgtcgcttggaa
catacaactctacgaaaggttacagctaacacagctatattttatgatccagatccacaa
aatacagttattgcagaagatcaagattttgttaatgtttattatgaaatgcctgatttt
gatcctgcgcgtatgtctccatggttattgcgtatagagctagatcgtaagagaatgaca
gacagcaagttaagtatggaacaaattgctgaaaagattaaccagggttttggagatgat
ttaaactgcatatataatgacgataatgctgagaaattagtccttcgaataagaattatg
ggcagtggtgatgatagtaagaatatggaagatgaagagcagttagacaaaatggaagat
gatgtgtttttaagatgcattgaagctaatatgttgacagatatgactttacaaggaata
gaatctattgctaaagtttacatgcatttgccaagtgaagaatctaaaaagcgtgtaatc
tttaatgctgaaggagaatttaagcatttacaagaatggattttagaaacagatggtaat
gggttaatgaaagttctaagtcaaaaagacattgatccagtgagaactacttccaatgat
atatgtgaaatcttctctattttgggtattgaagctgtaaggaaatcaattgaaaaggaa
atggatcacgttatttcatttgatggttcttatgttaactacagacacttgtcattgttg
tgtgatataatgacatccaaaggtcatttgatggctattactcgtcatggtattaatagg
caagaagttggttgtctaatgagatgttcatttgaagaaactgttgatgttttggttgag
gctgcatttcatgcagaagcagataatttgcgtggggtaagtgagaatattattcttggt
caattaccgccaattggtactggctgcttcaacttgatgctagacgctgaaaaatgtaaa
gaaggcatggaaatcccattaaatattggagaaggccatggaatgatgccaggtggtggt
gttttttttggctctgcagcttctccatcaaatgctatgtcaccccagatgactccatgg
aatcagggacacacacctggttatggagatggttggtcaccagctttaggatctggaatg
acacctggagcagcatctttttcaccatcggctcattcagatgcaagtggattcagtcct
gctggtggttttagtcctgcttggagtccacaagattctatgtctttaggatcacctgat
tcctcaccatacataccgagcccttcaagaaatgttatgagtccaagttactctccaaat
tctcctgctttcaatccacaatcaccagcaatgtctccttcatctcctgggtattcgcca
acatctcctttatacagtccaacttctccaggttatagtcctacaagtccaagctacagt
ccaacatcacctggttatagtccaacttctccgagctattcccccacttctccaagctat
tcgcctacatcaccaagctatagtccgactagtccaagttactctcctacgtctccgagt
tatagtccaacatcgccaagctattctcctacttctccatcatattcacctacgtcacca
agttacagtccaactagcccaagttattctcctacatcaccgagctacagtccaacgagt
ccaagttacagcccaacttcacctatttatagccctacgtctccaagttattctccgaca
agtccatcttattctccgacaagtccatcttattctcccaccagtccaaaatattctcct
acatcacctagttatagtccaacatctccttcatatagtccttcttctcctcaatattct
cctacgagtccagcatattctcctcagtcaccttcttattctccttcatcgccaagctac
tcgcctacttcacctaagtatagtcctacatctcctaagtattctcctacttcacctaaa
tatagcccaacatctccatcctacagtccttcgtcaccatcatactctccgtcatctcct
aattattcaccaacaagccctacatactcaccgacaagtccaacatactctccaacaagc
cctgcatactcgccgacaagtccagcatattcacctacaagtcctgcatactcaccaacc
agcccagtatactcgccgacaagtccagcttacagcccaacttctcctaaatatagccca
acatcacctaaatatagtccaacatcaccaatttactctcctacaagtccagcatattct
ccaacatcaacaggatatagtccaacgtctcctgagtattctccttcaagtccaaaatat
agtccaacaactccccaatattctccaacaagtccaaagtatagtcctgcatcgccgacc
tactctcctagtacccctacagataagtcggttggttctattaattacagcccattggaa
cccgattatagtcctggtacacctacatattcacctgacggaactccaacctattctcct
gacggtcgagggttttcaggtactgctgctaaaaatatatcgccaatggattattcacca
agttctccatcgggtcccggtacccctgaggaaactttaaagtttaaaaaacgataa
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