Helicobacter mustelae: HMU03190
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Entry
HMU03190 CDS
T01191
Name
(GenBank) putative DNA-directed RNA polymerase beta' chain
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hms
Helicobacter mustelae
Pathway
hms03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hms00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMU03190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hms03021
]
HMU03190
03400 DNA repair and recombination proteins [BR:
hms03400
]
HMU03190
Enzymes [BR:
hms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMU03190
Transcription machinery [BR:
hms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMU03190
DNA repair and recombination proteins [BR:
hms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMU03190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CBG39581
UniProt:
D3UGG0
LinkDB
All DBs
Position
375570..384221
Genome browser
AA seq
2883 aa
AA seq
DB search
MPTKTKIKNRLRLDFTQSSQNLEIPNLLLLQRDSYNSFLESKDGKESGVEKVFRSVFPIQ
DAQNRLILEYDGCEFGKPKYTVREAMERGITYSIPLKIKIRLLLLDKDEKTEKISIKDIK
EQNIFIREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESSTTSNKLVYTGQIIPD
RGSWLYFEYDAKDTLFVRINKRRKVPITILLRAMGYTKQEILKIFYPLLKVKIKKEKHFI
EFKPENFEGRVEYDIKNMDGEVVVEAGKRLTKKKAQELSEKGLGWIEYPALIDRYLAEPI
IDPKTGEVLFDILTQIDEGKLKKIMEHRIKEFVIADDLAIGHDSGILKSFHVDADPLRML
KQSEKHENENDLAAIRIYKVMRPGEPVTKEVAKQFVKQLFFDPERYDLTRVGRMKMNHKL
GLEIPDYVTVLTQEDIIKSIKYLIKVKNGQGRIDDRDHLGNRRIRAIGELLANELHAGLV
KMQKAIKDKLTTPNINLETLMPLDLINSKMITSAILEFFTGGQLSQFMDQTNPLSEVTHK
RRLSALGEGGLVKERVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNELGFI
EAPYRKVVQGHVTQEVVYLTATQEDGHIIAPASTKLDANDNIVEDLIDARVGGEITLSEK
NKITLIDLSPRMLVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLIPDAPIVGTGIEKI
IARDAWEAIKASRPGVVEKVDAKNIYILGEDEAGAYIDSYPLQKNLRTNQNTSFAQRPIV
KVGDKVETHQIIADGPSMDTGELALGKNVRVAFMPWNGYNFEDAIVVSEHLIKEDYFTSV
HIYEKEIEARELKHGIEEITRDIPNVREDDIAHLDDSGIVKIGTYVSSGMILVGKVSPKG
EVKSTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKILTKKGYEKDERTRSAYEK
EKAVLDIEHHDRLTMLDKEERLRINTMLAKEVLGSDADISGKVYKKGEMVPQAEIAGISR
FALNTLIKSYSKNVQQKYNQIKSNFLEQKKTLGEEHEEKLSILEKDDILPSGVVKRVKIY
VATKRKLKVGDKMAGRHGNKGIVSNIVPAVDMPYTADGEPVDIVLNPLGVPSRMNIGQIL
EVHLGLVGKRFGEQILEVLEQQKKGFLKSLRAKMLEISDVINPNDSVMKDLLTHADDEEL
LGYARDWSKGVKFAIPVFEGITQEKFHKLFEMAKIQMDGKTDLYDGKTGEKIRERVNVGY
MYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAYTLKE
MLTVKSDDVKGRENAYKAITKGEAVGESEIPETFYVLTKELQSLGLDVNIFGDDVDENGQ
PKPIVVEEEKRPKDFNTFQLVLASPERIRSWSKGEVKKPETINYRTLKPERDGLFCTKIF
GPVRDYECLCGKYKKPRFKGVICEKCGVEVTSAKIRRSRMGHIELVTPVAHIWYVSSLPS
RIGTLLGVKMKDLERVLYYEAYIVKNPGEAFYDNESIKPVMKYDVLNEEQYQEINKRFED
RGFVAEMGGSVIKELLEELDIIELLKTLKEEIKNTNAESKKKTIIKRLKVVESFVNSGNR
PEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLLELDAPEIIVR
NEKRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRS
VIVVGPNLRMDQCGLPKNMALELFKPHLLAKLEEKGHATTMKQARKMVEQKTNEVWECLQ
EIVEGYPILLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLS
EQAIAECKILMLSSMNILLPASGKAVAVPSQDMVLGLYYLSLEKNQVAGEHKLFGSIQEI
MIALDAGSLDINARIRTVERNRVLNTTVGRMILKSILPDFVPVALWNKTLKKKDIGTLID
YVYKNGGIGVTATFLDNLKNLGFAYATKAGISISAADIIVPENKQRAVDFAKSEVKKIQI
QYDQGLLTEQERYNKIIDIWTDTNNKMSKEMMALVEADKGGFNSIYMMADSGARGSAAQI
RQLSAMRGLMAKPDGTIIETPIISNFKEGLNVLEYFTSTHGARKGLADTALKTANAGYLT
RKLIDVSQNVKIVVNDCGTHEGVEITDISVGSELIESLEERIFGRVVAEDIIDPITNEVL
YSAGILINEDMARHIVEVGIKSVIIRTPVTCKAEKGVCAKCYGLNLGEGKMSKPGEAVGV
IAAQSIGEPGTQLTLRTFHVGGTASRSQEEREIYAEKEGFIRFYNIKTYINKEGKTIVAN
RRNAAVLVVEPKIKAPFDGEIKIEVTHDEVLVYIVGAKEEIKYHLRKGDVAKPNELAGVG
GKIDGKLYIAYETGYRVFAGDSIVDIIKDGWNVPNRIPYGSELLVEDNAPIATRMVAKER
GIIKYYNLVADHLERAKDIKEGHVVKEKGLFAVIADGNDREAIRHYITRGSRILVGDSNP
VDSHTTIVEPENDQKTIIATWDPYNTLVIADQAGTVKFEDIMPGLSVTEKEDENTGITNL
VVNEYLPTGCKPTIVIEVNKQQSIRYPLDPKTAISVLEGSKVAMADVLARVPKATVKSRD
ITGGLPRVSELFEARKPKDFAILSEIDGIVSFGKSIRNKERLIVTSKDGNSVEYLVDKNR
QILVHADEFVHAGEAMTDGVVSSHDILRISGEKELHKYIISEVQQVYRRQGVSIADKHIE
IIVSQMLRQVRIIDSGNTKFIEGDLVSRRYFKEENERILSIGGDPAVAEPVLLGITRAAV
GSDSIISAASFQETTKVLTEASIAGKKDFLEDLKENVVLGRMIPVGTGLYKNKRVSLKIL
EQE
NT seq
8652 nt
NT seq
+upstream
nt +downstream
nt
atgccaacaaaaacaaaaataaaaaatcgattacgtcttgatttcacacaatcatcacaa
aatttggaaatccctaatttgttgttattgcaaagggatagctataactcttttttagaa
tctaaagatggcaaagaaagtggagtagagaaggtttttcgttctgtattccctattcag
gatgcgcaaaatcgcttaattttggaatatgatggatgcgaatttggcaagcctaaatat
actgttagagaggcgatggagaggggaattacctattccatacctctaaaaattaaaatt
cgtttattgcttttggacaaagatgaaaagaccgaaaaaataagcataaaagacatcaaa
gagcaaaatatatttatccgtgaaatcccattgatgacagatcgcacctcttttattatc
aatggcgtggagcgtgtggtggtcaatcaattgcacagaagtcctggcgtgattttcaaa
gaagaggagtctagcactacttccaataaattggtttatacggggcaaatcatcccagat
cgcggttcttggctgtattttgaatatgatgctaaggacacgctatttgtgaggatcaat
aagcgcagaaaggttcctattaccattttgcttcgcgcgatgggatataccaagcaagag
attttgaaaatcttctatccattgctaaaggtaaaaatcaaaaaagagaagcattttatt
gagttcaagcctgagaattttgaaggtagggtggaatatgatatcaaaaacatggatggg
gaagttgttgtggaggcaggcaagcgtctgaccaagaaaaaagctcaggaactatctgaa
aaaggtcttggttggattgaatatcctgctctaatagatcgttatttagcagagccaatc
atcgatccaaaaactggcgaagttttgtttgatattctcactcagattgatgagggtaag
ctcaagaaaattatggaacataggattaaggaatttgtgattgctgatgatttggccata
ggacatgatagtgggattttgaaatcctttcatgttgatgcagatccgctaagaatgcta
aagcaatctgaaaaacacgaaaatgaaaacgatcttgctgccattcggatttataaggtc
atgcgaccaggagagcctgtgaccaaggaggtggcaaagcaatttgttaagcagttattc
tttgatcctgagcgctatgatctcacccgcgtaggaagaatgaaaatgaatcataagttg
ggattagagatcccagattatgttactgttctcacacaagaagatattatcaagagtatc
aaatatctcatcaaagtcaaaaatggccagggaagaattgatgatagagatcatcttggc
aatcgaagaatccgcgcaattggagaactgcttgcaaatgagttgcatgcaggacttgtc
aaaatgcaaaaagccatcaaagataaactcactactccaaacataaatcttgagacttta
atgcccctggatttgatcaattctaaaatgattacttctgcaattctagaatttttcact
ggtggtcagctttctcagtttatggatcaaacaaatccactctctgaggtaacgcacaaa
aggcgtctttctgcattgggtgagggcggtcttgtcaaggagcgtgtgggatttgaggct
agggatgtgcatccgacccattatggcagaatctgccccattgagactccagagggtcaa
aatattggtctaattaataccctttctactttcacgcgcgtcaatgaactaggatttatt
gaggcaccctatcgaaaggtggtgcagggtcatgtaacccaagaagtggtgtatctcacc
gcaacgcaagaagatggtcacatcatcgctcctgccagcaccaagcttgatgcaaatgac
aatattgtagaagatcttattgatgctagggtgggtggcgagattactttgagtgaaaaa
aataaaattaccctgattgacctaagtcccaggatgcttgtgggagttgcagcatctttg
attccattcctagagcatgatgatgccaatagagcccttatgggatcaaatatgcaacgc
caagcagtgccccttttgatccccgatgcgccaatcgtgggaactgggattgaaaaaatt
attgctagagatgcatgggaggctatcaaggcctcgcgcccaggagtggtagaaaaagtc
gatgccaaaaatatctatattttgggagaagatgaggcgggtgcttatattgatagttat
cccttgcagaaaaatttgagaaccaaccaaaacacaagctttgcgcaaagacccatcgtg
aaggtcggtgacaaagtggagacgcaccaaatcattgccgatggccctagcatggacact
ggcgagcttgcattggggaaaaatgtgcgggttgcgttcatgccctggaatggttataac
tttgaggatgcaatcgttgtaagcgagcatttgattaaagaagattattttacctctgtg
catatctatgaaaaagaaatcgaagcgcgcgaactcaagcatggcatcgaggaaatcact
agggacattcctaatgtccgcgaagatgatattgcgcatttagatgatagcgggattgtg
aagatcgggacttatgtcagtagtggaatgattttggtgggcaaggtcagccccaaggga
gaggtgaaatccactcctgaggagagattattacgcgcaatttttggagaaaaagcaggg
catgtggtgaataaatccctgtattgccctccatctcttgagggaacggttgtggatgta
aaaatcctcaccaaaaaaggttatgaaaaagatgagcgcaccaggagtgcctatgagaaa
gagaaagccgtgcttgatatcgagcatcacgatcgtttgaccatgcttgataaagaagag
cgtctccgcatcaataccatgcttgccaaagaggtgcttggcagcgatgcagatatctct
gggaaagtatacaaaaaaggtgaaatggtgcctcaagcagagattgctggcattagccgc
ttcgcgctcaatacgcttattaagagctattctaagaatgtgcagcaaaaatacaatcaa
attaagagcaatttcttggagcaaaaaaagaccctgggggaggaacatgaggaaaagctt
tctatcttagaaaaagatgatattttgccaagtggcgtggtgaagcgcgtgaaaatctat
gtggcaaccaaacgcaagctcaaagtcggagacaaaatggctggaaggcatggaaataag
ggcatcgtctctaatattgtgcccgcggtggacatgccttataccgctgatggcgagcct
gtagacattgtactcaatcctctgggggtgcctagccgtatgaatattggccagatccta
gaggtgcatttgggtctagttggcaagcgctttggtgagcagattttggaggttttggag
cagcaaaaaaaaggattcctaaaaagtctgcgtgccaaaatgctagagattagcgatgtc
ataaatccaaatgatagtgtaatgaaggatctactcactcatgcagatgatgaggaatta
ttgggatatgctagggattggagcaagggggtcaagtttgccatcccagtgtttgaaggt
atcacacaggaaaaatttcataaactctttgagatggcaaaaatccagatggatggaaaa
accgatctctatgatggcaaaacgggtgaaaaaatccgtgagcgtgtgaatgtgggttat
atgtacatgctaaaacttcaccatctcgtggatgaaaaagtgcatgcaagaagcacaggg
ccttatagcctggttactcagcagcctgtgggtgggaaggctctttttggtggacagaga
ttcggtgagatggaagtgtgggcactagaggcttatggtgctgcatatacgctcaaggaa
atgttgacggtgaaatcagatgatgtcaagggtcgggaaaatgcctataaggccatcacc
aagggtgaggcagtgggggaatcagagattccagagaccttttatgtattgaccaaggaa
ttgcagtctttggggttggatgtgaatatttttggcgatgatgttgatgaaaatgggcag
cccaagccaatcgtcgtggaagaggaaaaacgtcccaaggactttaatacttttcagttg
gttttggcaagcccagagcggattcgatcctggagcaagggagaggtgaaaaagcctgaa
accatcaattataggacattgaaaccagagagagacggacttttttgtactaagattttt
ggccctgttagggattatgaatgcctgtgtggaaaatacaaaaaaccccgcttcaagggc
gttatttgcgaaaaatgtggggtggaggtgacgagcgcaaaaatccgaagatctagaatg
gggcacattgagcttgttaccccagtggcacatatttggtatgtgagttctttgcctagc
aggattggcacattgcttggtgtgaaaatgaaggatcttgagcgcgtgctgtattatgag
gcatatatcgtaaaaaatccaggtgaagcattctatgataatgaatccatcaagcctgtg
atgaaatatgatgtgcttaatgaagagcagtaccaagaaattaacaagcgttttgaagac
aggggctttgttgctgaaatgggtgggagtgttatcaaggaattgctagaagagcttgat
attattgagcttttaaaaacactcaaagaagagatcaaaaacaccaacgcagaatccaag
aaaaaaaccatcatcaagcgcctgaaggtggtggagagctttgtaaattctggaaatcgt
cctgaatggatgatgcttacagtattgcctgtgcttccaccagatttaagacctttggtg
gcattagatggtggcaagtttgcagttagcgatgtgaatgatctttatcgccgtgttatt
aatcgtaatcaacgcttgaagcgtttgctagagcttgatgctccagagatcattgtaaga
aatgagaaaagaatgctccaagaagcagtggatgcactctttgataatggaagaaatgca
aatgctgtcaaaggtgctaataagcgtcccttgaaatctctctctgaaatcatcaaagga
aagcagggaagattccgccagaatcttcttgggaagcgtgtggatttttctggaagaagt
gttattgttgtgggtccaaatctccgtatggatcaatgtggattacccaaaaatatggcg
cttgagttattcaagcctcatctgcttgctaaattggaagagaagggtcatgctactacg
atgaagcaggccagaaaaatggttgagcaaaaaaccaatgaggtttgggagtgtttgcaa
gaaattgttgagggttatccgattttgctcaatcgtgcaccgactttgcataagcagtct
attcaagccttccaccccaagctcattgatggcaaggcaattcaactacacccgctagtt
tgttctgcttttaatgcagattttgatggagatcagatggcagtgcatgtacctttgtct
gagcaggctattgcagaatgtaaaatcttgatgctaagctctatgaatattttgctgcca
gcaagtggcaaggccgttgcggtgccgagtcaagacatggttttggggctttattatctc
tctttggagaaaaatcaagtggctggtgagcataagctttttggaagcattcaagaaatt
atgatcgcactggatgcgggtagtcttgatatcaatgctagaatccgcaccgtggagaga
aatagggtactaaataccacggtaggaaggatgattttaaaatccatcttgccagatttt
gttcctgtggcattgtggaataagacactgaagaaaaaagacatcggcacattgattgat
tatgtgtacaaaaatggtggcattggagttactgcaacattcttggataatcttaaaaat
cttggttttgcgtatgccacaaaggcgggtatttctatttctgcagctgatattattgtg
ccagagaataagcaaagggcagtggattttgcaaaatctgaagtgaagaaaatccagatc
caatatgatcaaggacttttgacagagcaggagcgttacaacaagatcattgatatttgg
acagataccaataacaaaatgtccaaagaaatgatggcgcttgtggaggcagacaaaggg
gggttcaactccatttatatgatggcagattctggtgcaaggggtagtgcagcgcagatt
cgtcagctttctgcaatgcgtggtttgatggcaaaacctgatgggactattattgaaaca
cccattatttcaaactttaaagagggattgaatgtattggaatacttcacctctacccat
ggagcaagaaaaggattggcagatactgcgctaaaaactgcaaatgcgggttatttgaca
aggaaattaattgatgtttcgcaaaatgtaaaaattgttgttaatgattgcggtacgcat
gagggcgtggagatcacggatatttctgtgggtagcgagttgattgaatctttggaggag
aggatttttggacgcgttgtggctgaggatatcatcgatcccatcaccaatgaagtgctc
tatagtgctggaattttgattaatgaagatatggcaaggcatatcgtagaggtgggcatc
aaatctgttatcatccgcactcctgtgacctgtaaggcagagaaaggtgtatgtgcaaaa
tgctatggattgaatttgggcgagggcaagatgagtaagcctggtgaagcagtgggtgtc
atcgctgctcaatccattggtgaaccaggaacacagctcaccctaagaacattccacgta
ggtggaaccgcctcaagaagtcaggaagagcgcgaaatttacgcagaaaaagaaggattt
attcgcttttacaatataaaaacctatatcaacaaagagggcaaaaccatcgtagccaat
cgaagaaatgccgctgtgcttgttgtagagccaaagattaaggcaccatttgatggagaa
atcaagatagaagtgacgcatgatgaagtgcttgtttatattgttggggccaaagaagaa
ataaaatatcaccttagaaaaggagatgtggccaagccaaatgaacttgcaggagtgggt
ggaaaaatcgatggtaagctttatattgcctatgaaacgggatatagggtctttgctggc
gatagcattgtggatattattaaggatggttggaatgtgcccaatcgtattccttatggt
agtgaattacttgtagaggataatgctcccattgctacaaggatggttgccaaagaaagg
ggaatcattaaatattacaatcttgtggccgatcacctcgagcgcgctaaagatatcaaa
gaaggtcatgtggtgaaggaaaagggtctttttgcggtgattgcagatggtaatgatcgt
gaggcaatccgtcactatattacccgcggctctaggatattggtgggggatagtaatcca
gtggattctcatactaccattgtagaaccagaaaatgatcaaaaaactattatcgccact
tgggatccctataatacattagtgattgcagatcaggcaggaacggtaaaatttgaggat
attatgccaggattaagcgttacggaaaaagaagacgagaacaccgggataacaaatctt
gttgttaatgaatatttgcctacgggttgcaagccaaccattgtgattgaagtcaataaa
caacaaagcattcgctatccattagatcctaaaactgcgatttctgtgcttgagggtagc
aaggttgcaatggccgatgtgttagcaagggtgccaaaagccactgttaaatctcgtgat
atcactggaggtttgcctagagtttcagaattatttgaggccagaaagccaaaggatttt
gcaattctttcagaaattgatggcattgtaagttttggaaaaagcattagaaacaaagaa
aggcttattgtcacgtctaaggatggaaatagcgttgaatatcttgtggacaagaatcga
caaattttagtgcatgcagatgaattcgtgcatgcaggggaggccatgacagatggtgtg
gtctctagccatgacattttgcgcattagcggagagaaggaattgcataaatacatcatt
agcgaggtgcagcaagtctatcgaagacagggggttagcatcgcagataagcatattgaa
atcattgtatcacaaatgctaagacaggtgcgcatcattgatagtgggaatactaaattt
attgagggggatttggtaagtaggcgttatttcaaagaagaaaatgagagaatcctaagt
attggaggcgatccagcagtggctgagcctgtgttgctaggaattacaagggcagcagtg
ggaagtgatagcatcatttctgcagcttcattccaagaaactaccaaggttttgacagag
gcgagtatcgctggcaaaaaagactttttagaagatctcaaagaaaatgttgttttgggt
aggatgatcccggtgggaacagggttgtataagaacaaaagagtatctttgaaaatatta
gagcaagaataa
DBGET
integrated database retrieval system
