Hymenobacter nivis: DDQ68_09495
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Entry
DDQ68_09495 CDS
T05498
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
hnv
Hymenobacter nivis
Pathway
hnv00540
Lipopolysaccharide biosynthesis
hnv01100
Metabolic pathways
hnv01250
Biosynthesis of nucleotide sugars
Module
hnv_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
hnv00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
DDQ68_09495 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hnv01005
]
DDQ68_09495 (rfaD)
Enzymes [BR:
hnv01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
DDQ68_09495 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
hnv01005
]
Core region
DDQ68_09495 (rfaD)
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
Ldh_1_N
Motif
Other DBs
NCBI-ProteinID:
AWM32989
UniProt:
A0A2Z3GGM9
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All DBs
Position
2153110..2154078
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AA seq
322 aa
AA seq
DB search
MIVVTGAAGFIASALVSRLNAANFNDLVVVDNFSVEKKLRNLEGKKLREYVDREEFFAWL
DEHHAQVEFVFHLGARTDTAEMDPAVFDLLNLNYSKQMWLACCQYQLPLVYASSAATYGD
GALGYSDADDALLPLYRPLNPYGESKNDFDNWAVAQAEKPYFWAGLKFFNVYGPNEYHKG
RMASVVFHAFQQIQQNGSMTLFKSHNPDYVDGGQMRDFVYVKDVVEVCYFLLHHRKDSGL
YNLGSGTARTFMDLALNTFTALGAPVDIRFRDTPEDIRDKYQYYTQADMRKLHSIGYPNA
FASLEEGIRDYVQQYLLPDQYY
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgatagttgtcactggtgcggcgggctttattgccagcgccctcgtttcccgcctcaac
gcggccaattttaacgacttagtggtcgtggacaacttctcggtggagaaaaagctgcgc
aacctcgaaggcaaaaagctgcgcgagtacgtggaccgcgaggagtttttcgcgtggctt
gacgagcaccatgcgcaggtcgaattcgtgtttcacctgggggcccgcaccgacaccgcg
gaaatggacccggcggtattcgacctgctgaacctgaactactccaagcagatgtggctg
gcctgctgccagtaccagctgccgctggtatacgcttcgtcggcggctacctacggcgat
ggggccctgggctactccgatgccgacgacgcgctgctgcccctctaccgcccgctgaac
ccgtacggcgaatcgaagaacgacttcgacaactgggccgtggcgcaggcggagaagccg
tatttctgggccgggctgaagtttttcaacgtgtatgggcccaacgagtaccacaagggg
cgcatggcgtcggtcgtttttcacgccttccagcaaatccagcaaaacggctcgatgacg
ctcttcaaatcgcacaaccccgactacgtggacggcggccagatgcgcgattttgtgtac
gtgaaggacgtggtggaggtgtgctacttcctgctgcaccaccgcaaagattcgggcctt
tataacctgggcagcggcacggcccgcacgtttatggacttggccctgaacacgttcacg
gcgctgggggccccggtagacatccgcttccgcgacacgccggaggacatccgcgataag
taccagtactatacccaggccgacatgcgcaagctccacagcatcggttaccccaacgct
tttgcctcgctggaggaaggcatccgcgactacgtgcagcagtacctgctgcccgaccag
tactactaa
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