Hemiscyllium ocellatum (epaulette shark): 132837345
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Entry
132837345 CDS
T09720
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03030
DNA replication
hoc03410
Base excision repair
hoc03420
Nucleotide excision repair
hoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132837345 (lig1)
03410 Base excision repair
132837345 (lig1)
03420 Nucleotide excision repair
132837345 (lig1)
03430 Mismatch repair
132837345 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hoc03032
]
132837345 (lig1)
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132837345 (lig1)
Enzymes [BR:
hoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132837345 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
132837345 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
132837345 (lig1)
DNA replication proteins [BR:
hoc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
132837345 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
132837345 (lig1)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
132837345 (lig1)
NER (nucleotide excision repair)
Other NER factors
132837345 (lig1)
MMR (mismatch excision repair)
Other MMR factors
132837345 (lig1)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
132837345
NCBI-ProteinID:
XP_060712994
LinkDB
All DBs
Position
49:complement(12933726..12981527)
Genome browser
AA seq
988 aa
AA seq
DB search
MQRSIVSFFQPLRGRKAETPKEGNHGPAQAEPAGNSPLKVRNVSVNPDWDLSPVKRVVRQ
TRRVLDSSDDDCERENEEMGFGDSEELRRDELLPDTPAERSEPVSVSPESGGESSPSSPW
PSNISGFPRRRTARKQLPKRKLQAENSADTGAETPSRNCVEPCLERSAKRVKVEENGDCS
DEEGTGVNVHGSPAKLPNDGGAKELADSGDVELEGQGVRPQTGQEAQLEESDGEQGLENE
LSTEKGKARESERPQGAGEKSKNTLNSFFAPRKSSSSATQEGDRSSQEQPGAGRDQGTLS
PRGGRGGHTLDSTGSGTISRSLNPTKAVPVSEPANVYDPSKPRYHPVTDACWSQGQRVPY
LALAQTFEKIESESARMKIIETLSNFYRSVVALSPDDLLPCIYLCLNQLAPAYQGLELGI
GDTVLMKAVAQATGRQLSKVKVEAQEKGDLGLVAESSRSTQRTMFPPAALTVTSVFSRLK
DIARMAGSASMNKKIEVIKGMFVACRHSESRYLIRSLSGKLRIGLAEQSVLAALGQAVCL
TPPQPDTLDLLDAGKGMSAENRKSWIEEKTLLLKQAYCELPNYDVIVPVLLREGIDKLPE
LCRLTPGIPLKPMLAHPTKGIGEVMKRFDEAAFTCEYKYDGERAQIHILDTGDIHIYSRN
QENNTSKYPDIIDRLPKVKLPHVRSCVLDSEAVAWDPVNRHILPFQVLTTRKRKDVDAAE
ISVQVCVYPFDLLYLNGESLVKQPLSKRRQLLRESFSEVEGEFMFAQSMDSSNTEEIAEF
LEQSIKDSCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYHGRGK
RTGVYGGFLLACHEEDTEEFQTICKIGTGFKDEELEQHAKFFKEHVIDGPRPYYRWDHSA
EPDHWFDAAQVWEVKCADLSISPVYKAALGLVDEEKGISLRFPRFLRIRDDKKPENATTS
QQVADLYRKQQQVQNQQGVIEGELEHLD
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgtatccttcttccagccgctccgaggcaggaaagctgagactccg
aaagagggaaaccacggtccggctcaggctgagcccgcagggaactcccccctgaaggtg
aggaacgtgagtgtaaaccccgactgggacctgagtcccgtgaagcgcgtggtgaggcag
acccgccgtgtactggacagcagcgacgatgactgcgagagagagaacgaggagatgggc
ttcggagacagtgaggagctgaggagagatgagctgctccctgacactccagctgagcga
tccgaacctgtctcggtttctccagagtccggaggggaatcatcaccatcgagcccttgg
cccagcaacatctccgggtttccgagacgtcgtacagcccgtaaacagctgccgaagcgt
aagctccaggcggagaactctgcggacactggagctgagacaccgtcgcggaattgcgtg
gagccctgtctggaaagatcagccaaacgcgtgaaggtggaagaaaatggggattgttcg
gatgaggagggcacaggtgtgaacgttcatggctccccggccaagctgccaaatgatgga
ggggccaaggagttggcagacagcggagacgtggagctggaggggcagggagtcagaccc
caaaccggacaggaggctcaactcgaggaatccgacggggaacagggtttggagaatgag
ctctcaacagagaaggggaaggcccgtgagagtgagaggccccagggggcaggcgagaaa
agcaaaaacacgctcaacagcttctttgctcccaggaagtcctcttcctcagccacccag
gagggagacagaagctcccaggaacagccaggggccggcagagaccagggcaccctctcg
ccaagaggggggcgagggggccacaccctggattcgaccggcagtggcaccatcagcagg
tccctgaatcccaccaaagccgtcccggtgtctgaaccagccaacgtctatgacccgtct
aaaccgcgataccatccagtcacggacgcctgctggagccagggtcagagggttccatac
ttggcattggctcaaaccttcgagaagatcgagagcgagtcagcgaggatgaagattatt
gagaccctgagtaatttttaccgttcagtagttgccctgagccctgacgacctcctgccc
tgtatctacctgtgtctgaatcagctggcacctgcctaccagggtctggagctgggcatc
ggagacaccgtcctcatgaaggctgtggctcaggcgacaggccgacagctcagtaaggtg
aaggtggaggcgcaggagaaaggagacttaggccttgtggcggagtccagtcggagcacg
cagagaaccatgtttcccccagccgcgctcaccgtcactagcgtgtttagccggctcaag
gacatcgctcgtatggctggctccgcgtcaatgaataagaagatcgaggtgatcaagggt
atgtttgttgcctgtcgtcactcagagtctcgatatctgattcggtctctcagtggcaag
ttacggattggacttgctgagcagtctgtccttgcggctctgggccaggcggtctgcctg
acccctcctcagcccgacaccctggatctcctggatgctgggaaggggatgtcagcggag
aatcgaaaatcctggatcgaggagaagaccctcctgctcaagcaagcttactgtgagtta
cccaactatgacgtgatcgtccctgtcctcctgagggaagggattgacaagcttccagag
ctctgccgcctcacgccaggaatccctctgaaaccaatgctcgcccacccaacgaaaggc
attggggaagtgatgaagaggttcgatgaagcagcgtttacctgcgagtacaaatacgat
ggggagagagcacagatccacatcctggacacgggagacattcacatctacagccgtaat
caagaaaacaatacctccaagtaccctgacatcatcgacagacttcccaaggtaaagctc
cctcacgttcgctcgtgtgtgctggactctgaggccgtggcctgggatccggtgaacagg
cacatcctcccgttccaagtgctgaccacccgcaagcgcaaggacgttgatgctgctgag
atctcagtccaggtctgtgtttatccctttgatctcctgtacctgaatggtgagtccctg
gtgaagcagcccctcagtaaacgtcgccagttactgcgtgaatctttctcagaggtggaa
ggggagttcatgttcgcccagtctatggacagctcgaacacagaggagattgcggagttt
ctggagcagtcgatcaaggattcctgcgaggggctgatggtgaaaactctagaagtggat
gcgacatatgagattgctaagagatcccacaattggctaaagttgaagaaagactacctc
gatggtgttggcgataccctggacctggtggtgattggagcatatcatggcaggggcaaa
cggaccggggtgtatgggggcttcctcctggcctgtcacgaagaggacactgaggagttt
cagaccatttgtaagattgggaccgggttcaaagacgaggagctggagcaacacgcgaaa
ttcttcaaggagcacgtcatcgatggccctcgcccctactatcgatgggaccactcggct
gagcctgaccactggtttgacgcagctcaggtctgggaggtcaaatgcgctgatctctcc
atctccccggtttacaaagcagccttgggactggtggacgaagagaagggaatctcgctg
cggttccctcggtttctccgtatccgagatgacaagaaacctgagaatgctacaaccagc
caacaggtggctgacctctacaggaaacagcagcaggtccagaaccagcaaggggttatc
gagggagagctcgagcatttggactga
DBGET
integrated database retrieval system
