Helicobacter pylori HPAG1: HPAG1_1137
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Entry
HPAG1_1137 CDS
T00365
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hpa
Helicobacter pylori HPAG1
Pathway
hpa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPAG1_1137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpa03021
]
HPAG1_1137
03400 DNA repair and recombination proteins [BR:
hpa03400
]
HPAG1_1137
Enzymes [BR:
hpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPAG1_1137
Transcription machinery [BR:
hpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPAG1_1137
DNA repair and recombination proteins [BR:
hpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPAG1_1137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ABF85204
UniProt:
Q1CS68
LinkDB
All DBs
Position
complement(1199313..1207985)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLSLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDSQGKIILLAGKKLTSKKIKELKENHLEWVEYPMDILINRHLA
EPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFLADYESLRL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGAVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIARMLEDKTKDFAKELRVKMLEIANAINEKDPLTIHALENCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIVKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRISTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFIAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMIAIAKDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGEQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGTIKYYVLEANHLERTHGIKKGDMVSEKGLFAVVADDNGREAARHYIARGSEILIDDN
SEVSANSVISKLTTNTFKTIATWDPYNTPIIADFKGKVSFVDVIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEMRYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVISSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARMIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRTLEDGPKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccgaca
gatttagaagttcctaatttattatcattacaacgagacagctatgattctttcttgtat
tccaaagatggcaaagagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgtatcactttagaatacgcaggttgcgaatttggcaagtctaaatac
actgttagagaagcgatggagagaggcattacctactctatccccctcaaaattaaagtg
cgcttgatcttgtgggaaaaagacaccaagagtggcgaaaagaacggcattaaggatatt
aaagaacaaagcattttcattcgtgagatccctttgatgacagaacgcacttcatttatt
atcaatggggtggagcgcgtggtggtcaatcaactccacagaagccccggtgtgattttc
aaagaagaggagtctagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggttgtattttgaatacgattctaaagatgttttgtatgctcgtatc
aacaaacgccgtaaagtgcctgttaccattttattcagggcgatggattatcaaaaacaa
gacatcattaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcttcattagacgccaatcaaagaatggaatttgacttgaaagattcacaa
ggcaagatcattcttttagcgggtaaaaagctcacttcaaaaaagattaaagagcttaaa
gaaaaccatctagaatgggtggaataccctatggatattttaatcaatcgccatttagct
gagcctgttatggtggggaaagaagtcttattggacatgctcactcagctagataaaaac
aaattagaaaaaatccacgatttaggcgtgcaagaatttgtgatcatcaacgatctagcg
ttagggcatgacgcttccattatccattcttttttggccgattatgagtctttgagatta
ctcaagcaaaccgaaaaaattgatgatgaaaacgctctagcggcgattcgtatccataag
gttatgaaaccaggcgatcctgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatccagaacgctatgatttgaccatggtggggcgcatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacatcacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaaaatcaaaaacaatcagggcaagattgatgatagggatcacttg
ggcaatcgtaggatcagagcggtaggggaattattggctaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagtggggcttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggcggtcagctctcgcaatttatggatcaaacgaaccccttgagtgaggttacgcac
aaacgccgcctttcagcactcggtgaaggggggttggtgaaagacagggtagggtttgaa
gctagggatgtgcaccccacgcattatggccgaatttgtcccattgagaccccagaaggt
caaaatatcggtttgatcaacaccctttccactttcacgagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtagtgggtgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcccgcaagcacccccattgatgaagag
ggtaatattttgggcgatttgattgaaacgcgcgtggaaggcgaaatcgttttaaacgaa
aaaagcaaagttaccttaatggatttaagctctagcatgctagtaggggtcgccgcatcg
ctcattcctttcttagagcatgatgacgccaaccgcgccttaatggggactaacatgcag
cgccaagcggtgcctttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaagccaatcgtgcaggcgctgtagaaaaa
attgattctaaaaatatttacattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagtccctatc
gttaaagtgggcgataaagtggaagccgggcaaatcatcgctgatggccctagcatggat
aggggcgagttagcgttagggaaaaacgtgcgcgtggcgttcatgccttggaatggctat
aactttgaagacgccatcgtggtgagtgaacgcatcactaaagacgatattttcacttcc
acccacatttatgaaaaagaagtggacgctagggagcttaagcatggcgtggaagaattt
accgctgatattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtgggcacttatgtgagtgctggcatgattttagtgggcaagacttctcctaaa
ggcgagattaaaagcacgcctgaagaacggcttttaagggctatttttggggataaagct
gggcatgtggtcaataagagtttgtattgcccccccagtttggaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggctatgagaaggatgcgcgagttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgatcgcttgaccatgctcaatagagaa
gaattgttgcgcgttagttcgctcctttctcaagcgattttagaagagcctttcagccat
aacggcaaggattataaagaaggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggccagtttggtgaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaagaaagttttgggcgaagagcatgaagaaaag
ctttctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcggatatgccttataccgctgatggcgag
cctgtggatattgtcttaaaccctttaggcgtgccaagccgcatgaatatcgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttgggaagcaaatcgctcgcatgcta
gaggataaaaccaaagattttgccaaagaattgcgcgttaaaatgctagaaatcgctaac
gccattaatgaaaaagaccctttgacaatccatgcgcttgagaattgttctgatgaagag
cttttggaatacgctaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttacaagctatttgaattagccaagatcgctatggatggc
aaaatggatctgtatgacgggcgtacaggcgaaaaaatgagggagcgcgtgaatgtgggc
tacatgtatatgatcaaactccaccacttagtggatgaaaaagtccatgccagaagcaca
ggcccttatagcttagtaacgcaccagcctgttgggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggccttggaagcttatggcgcagcgcacactctaaaa
gaaatgctcaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gttaaaggtgagcaagtgggcgagagtgaaatccctgagactttctatgtcttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaggatgga
gcgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagctctttccaa
ctcactctagccagccctgaaaaaatccattcttggagttatggggaagttaaaaagcca
gaaacgatcaattatcgcactctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccccactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcatatttggtatgttaattccttg
cctagccgtatcagcacgcttttaggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagaaccaggcgaagccgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggctttatagcacaaatgggcggcgaagcgatcaaggatttgttagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacaccaattccgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacagacctgagtggatgatgctcacggttttaccggtattgccgccggatttaaggcct
ttagtcgcgctagatggcgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gttattaatcgtaaccaacgcttgaaacgcttgatggagcttggagcgccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggtcgc
agcaccaatgcggttaaaggggctaacaaacgccctttaaaatcgctcagcgagatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggttgggcctaaccttaaaatggatgaatgcgggttgcctaaaaac
atggcgttagaactctttaaaccgcatttgttatccaagcttgaagagagaggctatgcc
accacgctcaaacaagctaaacgcatgattgaacaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgttactcaaccgcgctcctaccttgcacaag
caatccattcaagcgttccatccaaagctgattgatggcaaagcgatccaattgcacccg
ttagtgtgttcagcgtttaacgccgattttgacggggaccaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctgatgctaagctctatgaatatcctt
ctgcccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagcggggtcaagggcgagcataagcttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatcgctacgagcgcggggcgcatgatcattaagtctattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaagatattggtgtgctt
gtggattatgtgcataaagtcggtggtatcggcattaccgcaacctttttggataatttg
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtagaggttaaaaaaatc
cagcaacaatacgatcaagggctactcactgaccaagagcgttacaataaaatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgatcgctatcgcaaaagat
aaagagggctttaactctatttatatgatggcagatagcggtgcaaggggtagcgcggcg
caaatccgtcagctttcagcgatgaggggtcttatgacaaagccggacggcagcatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggcttagcggatactgcgctaaaaacagccaatgcggggtat
ttgacaagaaaactcattgatgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggcttgaatttgggcgaaggcaagatgagctatccaggtgaagcggtg
ggcgtggtagccgcgcaatctattggggagcctggaacgcagctcactttaaggactttc
catgtgggcggaacagcgagcaggagtcaggatgagcgcgaaattgtagcgagcaaagaa
ggttttgtgcgtttttataaccttaggacttacacgaacaaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgag
caagaagctaagttcgttttaagaagaagcgatattgtcaagccaagcgaattagccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctagtgggcataaggtgcat
aaggggggaagtatcgctgatattatccaagagggttggaatgtgcctaatcgcatccct
tatgcgagcgaattgctagtcaaggataatgaccctattgcacaagatgtgtatgccaaa
gaaaaaggcacaatcaaatactatgttttagaggctaaccatttggagcgcacccatggg
atcaaaaagggcgatatggtgagcgaaaaaggcttgtttgcggtggtagctgatgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagcgtgatctctaaactcacgactaacactttcaaaacgatt
gccacatgggatccttacaacacccctatcattgcggactttaaaggtaaggtgagtttt
gtggatgttatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggtatcacc
agtttagtggtgaatgattacatcccaagcggatacaaaccaagcttgtttttagagggg
gctaatggcgaagagatgcgttatttcctagagccaaaaacttctatcgccattagcgat
ggctctagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatcc
agggatattactgggggtctcccaagggtttctgaactctttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagtggatgggattgtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacttctaaagatggccgttccatggattattttgtg
gataaaggcaagcaaattctagtgcatgctgatgaatttgtgcatgcaggagaggcgatg
acggatggagtaatttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtaagcattgccgac
aagcacattgaaatcattgtttctcaaatgctaaggcaagtgcgtattttagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtatgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcacc
agagcggctatcgggagcgatagcatcatttcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtatcgctatgaaaaaagactttttagaagacttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacgggcatgtataagaataaaaaaatcgtg
ctgagaacgcttgaagatggccctaaattttga
DBGET
integrated database retrieval system
