Helicobacter pylori 83: HMPREF0462_0549
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Entry
HMPREF0462_0549 CDS
T01915
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
hpx
Helicobacter pylori 83
Pathway
hpx00540
Lipopolysaccharide biosynthesis
hpx01100
Metabolic pathways
hpx01250
Biosynthesis of nucleotide sugars
Module
hpx_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
hpx00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
HMPREF0462_0549 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hpx01005
]
HMPREF0462_0549 (rfaD)
Enzymes [BR:
hpx01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
HMPREF0462_0549 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
hpx01005
]
Core region
HMPREF0462_0549 (rfaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
KR
FCSD_central
Motif
Other DBs
NCBI-ProteinID:
AEE70154
UniProt:
F4D579
LinkDB
All DBs
Position
531962..532954
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AA seq
330 aa
AA seq
DB search
MRYIDDELENQTILITGGAGFVGSNLAFYFQENHPKAKVIILDKFRSNTLFSNKRPSSLG
HFKNLIGFKGEVVIADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLDQELVMKTNYQAFL
NLLEIARSKKAKVIYASSAGVYGNTKAPNVVGKNEGPENVYGFSKLCMDEFVLSHSNDNI
QVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANV
KAMKAQKSGVYNVGYSQARSYNEIVSILKEHLGDFKVTYIKNPYAFFQNHTQAHIEPTIL
DLDYTPLYDLGSGIKDYLPHIHAIFKEQCA
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcgttatattgatgatgaattagaaaatcaaacgattttaatcaccggtggggctggc
tttgtgggcagtaatctggccttttattttcaagagaaccaccctaaagctaaagtaatc
attttggataagtttcgcagtaacacgctcttcagtaataagcgccccagttccctaggg
cattttaagaatttaatcggttttaagggtgaggtggttatagctgatattaataacccc
ttagatttaaggcgtttagaaaaattgcattttgattatttgttccaccaagccgctgtc
tctgatacgaccatgctggatcaagaattagtgatgaaaaccaactaccaggctttttta
aaccttttagaaatcgctcgctcaaaaaaagctaaagtgatttacgcttcttcagcaggc
gtttatggcaacaccaaagcccccaatgtggtaggcaaaaacgaaggccctgaaaatgtt
tatggcttttccaagctttgcatggacgaatttgtcctctcccattcaaatgacaacatt
caagtgggcttaaggtattttaatgtctatgggcctagggaattttataaagaaaaaacc
gcttctatggttttgcaactcgccttaggcgcaatggcgtttaaggaagtcaaacttttt
gaatttggcgagcaattaagggattttgtctatattgaagatgtgatccaagcgaatgtg
aaagcgatgaaggctcaaaaaagtggggtttataatgtgggttattcccaagccagaagt
tataatgaaatagttagcattttaaaagagcatttaggggattttaaagtaacttatatc
aaaaacccttatgctttcttccaaaatcacacccaagcgcatattgaacctactattttg
gatttagactacacccctttatacgatttaggaagcggcattaaagattatttgccccat
atccatgcgatttttaaagaacagtgcgcatga
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