Helicobacter pylori UM037: K750_02455
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Entry
K750_02455 CDS
T02659
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hpyi
Helicobacter pylori UM037
Pathway
hpyi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpyi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K750_02455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpyi03021
]
K750_02455
03400 DNA repair and recombination proteins [BR:
hpyi03400
]
K750_02455
Enzymes [BR:
hpyi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K750_02455
Transcription machinery [BR:
hpyi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K750_02455
DNA repair and recombination proteins [BR:
hpyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K750_02455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AGL69446
UniProt:
R4QIR7
LinkDB
All DBs
Position
complement(1129009..1137681)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDILINRHLA
EPVMVGKEVLLDILTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFLADYESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVIEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDVFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLNAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLENCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMTAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGAIKYYVLEANHLERTHGIKKGDMVSEKGLFAVIADDNGREAARHYIARGSEILIDDN
SEVSANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVSFVDVIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEARYFLEPKTSIAISDGSSVEQAEALAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVISSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRVLEYDPKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccgaca
gatttagaagttcctaatttattattattacaacgagacagctatgattctttcttgtat
tccaaagatggcaaagagagtgggattgaaaaggtttttaaatccattttccctattcaa
gatgagcataaccgtatcactttagaatacgcaggttgcgaatttggcaagtctaaatac
actgttagagaagcgatggagagaggcattacctactctatccccctcaaaattaaagtg
cgcttgatcttgtgggaaaaagacaccaaaagtggcgaaaagaacggcatcaaggatatt
aaagaacaaagcattttcattcgtgagatccctttgatgacagaacgcacttcatttatt
attaatggggtggagcgcgtggtcgtcaatcagctccacagaagccccggtgtgattttc
aaagaagaagaatccagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttatacgctcgtatc
aataaacgccgtaaagtgcctgttaccattttattcagggcgatggattatcaaaaacaa
gacatcatcaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcttcattagacgctaatcaaagaatggaatttgacttgaaagatccgcaa
ggcaagatcattcttttagcgggtaaaaagctcacttccagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaataccctatggatattttaatcaatcgtcatttagct
gagcctgttatggtggggaaagaggtcttattggacatactcactcagctggataaaaac
agattagaaaaaatccacgatttgggcgtgcaagaatttgtgatcatcaacgatctagcg
ttagggcatgacgcttccattatccattcttttttggccgattatgagtctttgaaatta
ctcaagcaaactgaaaaaattgatgatgaaaacgctctagcggcgattcgtatccataag
gttatgaaaccaggcgatcctgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatccagaacgctatgatttgaccatggtggggcgtatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacattacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagatcaaaaacaatcagggcaagattgatgacagagaccattta
ggcaatcgtaggatcagagcggtaggggaattattggctaatgaattgcattcaggctta
gtgaaaatgcaaaaaaccattaaagacaagctcactaccatgagtggggcttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggcggtcagctctcgcaatttatggatcaaacgaaccccttgagtgaagttacgcac
aaacgccgcctttcagcactcggtgaagggggattggtgaaagacagggtagggtttgaa
gccagggatgtgcaccccacgcattatggccgaatttgtcccattgagactccagaaggt
caaaatatcggtttgatcaacaccctttccactttcacaagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtagtgggtgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcccgcaagcacccccattgatgaagag
ggtaatattttaggcgatttgattgaaacgcgcgtggaaggcgagatcgttttaaacgaa
aaaagcaaagtaaccttaatggatttaagctctagcatgctagtaggggtcgccgcatcg
ctcattcctttcttagaacatgatgacgccaaccgcgccttaatggggactaacatgcaa
cgccaagcggtgcccttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaagccaatcgcgcaggcgttatagaaaaa
attgattctaaaaatatttacattttaggcgaaggcaaagaagaggcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagcttcaatcaagtccctatc
gttaaagtgggtgataaagtggaagccgggcaaatcatcgctgatggccctagcatggat
aggggcgagttagcgttagggaaaaacgtgcgcgtggcgttcatgccttggaatggctat
aactttgaagacgccatcgtggtgagtgagcgcatcactaaagacgatgttttcacttcc
acccacatttatgaaaaagaagtggacgctagggagcttaagcatggcgtggaagaattt
accgctgatattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtcggcacttatgtgagcgctggcatgattttagtgggcaaaacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggctcttaagggctatttttggggataaagct
gggcatgtggtcaataagagtttgtattgcccccccagtttggaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggctatgagaaagacgcgcgggttttgaacgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgatcgcttgaccatgctcaatagagaa
gaattgttgcgcgttagttcgctcctttctcaagcgattttagaagagcctttcagccat
aacggcaaggattataaagaaggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagtttagtcaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaataatttcttagagcaaaagaaagttttgggtgaagagcatgaagaaaag
ctctctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacggaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcggatatgccttataccgctgatggcgag
cctgtggatattgtcttaaaccctttaggcgtgccaagccgcatgaacatcgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttgggaaacaaatcgctagcatgcta
gaggataaaaccaaagattttgccaaagaattgcgcgctaaaatgctagaaatcgctaac
gccattaatgaaaaagaccccttgacaatccatgttcttgagaattgttctgatgaagag
cttttggaatacgccaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttataagctgtttgaattagccaagatcgctatggatggc
aaaatggatctgtatgacgggcgcacaggcgagaaaatgagggagcgcgtgaatgtgggc
tacatgtatatgatcaaactccaccacttagtggatgaaaaagtccatgccagaagcaca
ggtccttatagcctagtaacgcaccaacccgttgggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggccttggaagcttatggcgcagcgcacactctcaaa
gaaatgcttaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagcgaaatccctgagactttctatgttttgactaaa
gaattgcaatcgctcgctttggatatcaatatttttggggacgatgtggatgaggatgga
gcgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagctctttccag
ctcacactagccagccctgaaaaaatccattcttggagttatggggaagttaaaaagcca
gaaacgatcaattatcgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccctactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggtacatgcgaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcacatctggtatgtcaattcctta
cctagccgtatcggcacgcttttgggtgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagataggggctttgtagcgcaaatgggcggcgaagcgatcaaggatttgttagaagaa
attgatctgatcaccttattgcagagtttgaaagaagaagtgaaagacaccaattccgat
gcaaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgagtggatgatgctcacagttttaccggtattgccgccggatttaaggcct
ttagtcgcgctagatggtgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggggcaccagaaatcatt
gtgcgcaacgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgc
agcactaatgcggttaaaggggctaacaagcgccctttaaaatcgctcagcgagatcatt
aaaggcaagcaagggcgttttaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggttgggcctaatctcaaaatggatgaatgcgggttgcccaaaaac
atggcgttagaactcttcaaaccgcatttgttatccaagcttgaagagagaggctatgcc
accacgctcaaacaagctaaacgcatgattgagcaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgctactcaaccgtgctcctaccttgcacaag
caatccattcaagcgttccatccaaagctgattgacggcaaagcgatccagttgcacccg
ttagtgtgttcagcgttcaacgccgattttgacggggatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctgatgctaagctctatgaatatcctt
ctgcccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagcggggtcaagggcgaacataagcttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatcgctacgagcgcagggcgcatgattattaaatctattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggcggtatcggcattactgcaacctttttggataatttg
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaggatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtagaggttaaaaaaatc
cagcaacaatacgatcaagggttgctcactgaccaagagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgaccgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcggatagcggcgcaaggggtagcgcggcg
caaatccgtcagctttcagcgatgaggggtcttatgacaaagccggacggcagcatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggcttagcggatacagcgctaaaaacagccaatgcggggtat
ttgacaagaaagctcattgatgtttcgcaaaatgtcaaggtggtgtctgatgattgtggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgagccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcctattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggcttgaatttgggcgaaggcaagatgagttatccgggtgaagcggtg
ggcgtggtagccgcgcaatctatcggggagcctggaacgcagctcactttaaggactttc
catgtgggcgggacagcgagcaggagtcaggatgagcgtgaaatcgtggcgagcaaagaa
ggttttgtgcgtttttataaccttaggacttacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgat
caagaagctaaattcgttttaagaagaagcgatattgtcaagccaagcgaattagccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctagcgggcataaggtgcat
aagggaggaagtatcgctgatattatccaagagggctggaatgtgcctaatcgcatccct
tatgcgagcgaattgctagtcaaggataatgaccctattgcacaagatgtgtatgccaaa
gaaaaaggcgcaatcaaatactatgttttagaggctaaccatttagagcgtacccatggg
atcaaaaagggcgatatggtgagcgaaaaaggcttgtttgcggtgatagctgatgataat
ggtagggaagccgctcgccattatattgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagcgtgatctctaaacccacgactaacactttcaaaacgatt
gccacatgggatccttacaacacccctatcattgcggactttaaaggtaaggtgagtttt
gtggatgttatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggtatcaca
agcctagtggtgaatgattacattccaagcgggtacaaaccaagcttgtttttagagggg
gctaatggcgaagaagcgcgttatttcctagagccaaaaacttctatcgccattagcgat
ggctctagcgtggagcaggctgaagcgttagcgaaaatccctaaagcgaccgttaaatcc
agggatattactgggggtctcccaagggtttctgaactctttgaagcgagaaagcccaag
cctaaagatgtggcgatcctttctgaagtggatgggattgtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacttctaaagatggccgttccatggattattttgtg
gataaaggcaagcaaattctagtgcatgctgatgaatttgtgcatgcgggagaagcgatg
acggatggagtaatctcaagccatgatattttaaggatcagtggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtaagcattgcggat
aagcacattgaaatcattgtttctcaaatgctaaggcaagtgcgtattttagacagcggg
gatagcaaatttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagcctgcgattgctgaaccggtgcttttagggattact
agagcggctattgggagcgatagcatcatttcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtatcgctatgaaaaaagactttttagaggatttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacgggcatgtataagaataaaaaaatcgtg
ctgagagtgcttgaatatgaccctaaattttga
DBGET
integrated database retrieval system
