Helicobacter pylori SouthAfrica20: HPSA20_1285
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Entry
HPSA20_1285 CDS
T02807
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hpys
Helicobacter pylori SouthAfrica20
Pathway
hpys03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpys00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPSA20_1285 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpys03021
]
HPSA20_1285 (rpoC)
03400 DNA repair and recombination proteins [BR:
hpys03400
]
HPSA20_1285 (rpoC)
Enzymes [BR:
hpys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPSA20_1285 (rpoC)
Transcription machinery [BR:
hpys03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPSA20_1285 (rpoC)
DNA repair and recombination proteins [BR:
hpys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPSA20_1285 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGT74503
UniProt:
T1UDI1
LinkDB
All DBs
Position
complement(1212018..1216565)
Genome browser
AA seq
1515 aa
AA seq
DB search
MDEDGMPKPIVIKEDDRPKDFSAFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGL
FCMKIFGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIW
YVNSLPSRIGTLLGVKMKDLERVLYYEAYIVKEPGEASYDNEGAKLVMKYDILNEEQYQN
ISRRYEDRGFVAQMGGEAIKDLLEEIDLIALLQSLKEEVKDTNSDAKKKKLIKRLKVVES
FLNSGNRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELG
APEIIVRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSN
EVWECLQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQM
AVHVPLSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKL
FSSVNEIITAIDTKELDIHAKIRVLDKGNIIATSAGRMIIKSILPDFIPTDLWNKPMKKK
DIGVLVDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKV
EVKKIQQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMSAIAQDKEGFNSIYMMADSGA
RGSAAQIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKT
ANAGYLTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVID
PITNEILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCTKCYGLNLGEGKMSY
PGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRSQDECEIVASKEGFVRFYNLRTYTNKE
GKNIIANRRNASILVVEPKIKAPFDGELSIETVYEEVVVSVKNGEQEAKFVLRRSDIVKP
SELAGVGGKIEGKVYLPYANGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPITQ
DVYAKEKGTIKYYVLEANHLERTHGIKKGDMVSEKGLFVVIADNNGREAARHYIARGSEI
LIDDNSEVSANSLISKPTTNALSTIATWDPYNTPIIADFKGKVSFVDIIAGVTVAEKEDE
NTGITSLVVNDYIPSGYKPSLFLEGVNGEEVRYFLEPKTSIAISDGSSVEQAEVLAKIPK
ATVKSKDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKAIRNKEHIIVTSKDGRS
MDYFVDKGKQILVHADEFVHAGEAMTDGVISSHDILRISGEKELYKYIVSEVQQVYRRQG
VSIADKHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPV
LLGITRAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYK
NKKIVLRTLEEGPKN
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagacgggatgcctaaacccattgtcattaaagaagatgacaggcctaaagac
tttagcgctttccagctcactctagccagccctgaaaaaatccattcgtggagctatggg
gaagtgaaaaaaccagaaacgatcaattatcgcaccctaaaacccgaacgagacggcttg
ttttgcatgaaaatctttggccccactaaagattatgaatgcttgtgcggtaaatacaaa
aagcctcgcttcaaagatattggcacatgcgaaaaatgcggtgtagcgatcacgcactct
aaagttaggcgttttagaatggggcatattgaattggccactcctgtagcgcatatctgg
tatgtcaattccttgcctagccgtatcggcacgcttttaggcgttaaaatgaaagacttg
gagcgcgtgctttattatgaagcctatattgttaaagagccaggcgaagcctcttatgac
aatgaaggcgctaaacttgtaatgaagtatgatattttgaacgaagagcagtatcaaaat
atctcacgaagatacgaagacaggggatttgtggcgcaaatgggcggcgaagcgatcaag
gatttactagaagaaattgatttgatcgctttattgcaaagtttgaaagaagaagtgaaa
gacactaattcagacgccaaaaagaaaaaactcatcaagcgtttgaaagtggtagaaagc
tttttgaattctggtaacaggcctgaatggatgatgctcacggttttaccagtattgcca
ccggatttaaggccgttagtcgctctagatggcgggaaatttgcagtcagcgatgtgaat
gaattgtatcgtcgtgtcatcaatcgtaaccaacgcttgaaacgcttgatggagcttggg
gcgccagaaatcattgtgcgcaatgaaaaaaggatgttacaagaggcggtggatgtgctt
tttgataacggccgcagcaccaatgcggttaaaggagctaacaagcgccctttaaaatcg
ctcagcgagatcattaaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgc
gtggatttttcaggcaggagcgtgattgtcgttgggcctaatcttaaaatggatgaatgc
gggttgcctaaaaacatggcgttggaactcttcaaaccgcatttactatccaagcttgaa
gaaagaggctatgccaccacgctcaagcaggctaaacgcatgattgagcaaaaaagcaat
gaagtgtgggagtgcttgcaagaaatcacagaggggtatccggtgttactcaaccgcgcg
cccactttgcacaagcaatccattcaagcgttccacccaaaactcattgacggcaaagcg
atccaattgcacccgttggtgtgttcagcgtttaacgcggattttgacggggatcaaatg
gcggtgcatgtgcctttaagccaggaagcgatcgctgaatgcaaggtgctcatgctaagc
tctatgaatatccttttgcccgctagcggtaaagccgtagccattcctagccaggatatg
gttttagggctatattacctttctttagaaaagagtggggtcaagggcgagcataagctt
ttctctagcgtgaatgaaatcatcaccgctattgacaccaaagaattagacatccatgca
aagattagggttttggataaaggcaatattatcgctacgagcgcggggcgcatgatcatt
aaatccattttgcctgattttatccctacggatttgtggaataaacccatgaagaaaaaa
gatattggcgtgcttgtggattatgtgcataaagtcggcggtattggcattactgcaacc
tttttggataatttaaaaacgcttggctttaggtatgcgactaaggctggtatttctatc
tctatggaagatattatcacgcccaaagacaagcaaaaaatggtggaaaaagccaaagta
gaggtgaaaaaaatccaacaacaatacgatcaaggattgctcaccgaccaagagcgttac
aataaaatcattgacacttggactgaagtcaatgacaaaatgagcaaagaaatgatgagc
gctatcgcacaagataaagagggctttaactccatttatatgatggcagatagcggtgca
agggggagtgcagcgcaaatccgtcagctctcagcgatgaggggtcttatgactaaacca
gatggcagtatcattgaaacgcccattatttctaactttaaagaggggttgaatgtttta
gaatactttaactccacccacggcgctagaaagggcttagcggatacggcgctaaaaacc
gccaatgcggggtatttgacaagaaaactcattgatgtttcccaaaatgtcaaggtggtg
tctgatgattgcggcacgcatgaagggattgaaatcacggatattgcggtggggagtgag
ttgattgagcctttagaagagcgtatttttgggcgcgttttattagaagatgtgatcgat
cccattaccaatgaaatcttgctttatgcggacactttgattgatgaagagggcgctaaa
aaggtggtggaagccgggattaaatccatcacgatccgcaccccagtaacttgtaaagca
ccaaagggcgtgtgcacgaaatgctatggcttgaatttaggcgaaggcaagatgagttat
cctggggaagcggtaggcgtggtagctgcacaatctatcggggagcctggaacgcagctc
actttaaggactttccatgtgggagggacagcgagcaggagtcaagatgagtgcgaaatt
gtagcgagcaaagaaggttttgtgcgtttttataacctcagaacttacacgaataaagag
ggtaaaaacattatcgctaaccgccgtaacgcttctatcttggtggtagagcctaaaatt
aaagcgccttttgatggggaattaagcattgaaacggtttatgaagaagtggttgtgagc
gtgaaaaatggcgagcaagaagctaaatttgttttaagaagaagcgacattgtcaaacca
agcgaattggctggcgttggcggcaagattgagggcaaggtgtatttgccttacgctaat
gggcataaggtgcataaaggggggagtatcgctgatattatccaagagggctggaatgtg
cctaatcgcatcccttatgcgagcgaattgctggttaaggataatgaccccatcacgcaa
gatgtgtatgcgaaagaaaaaggcacgatcaaatactatgttttagaggccaaccattta
gagcgcacccatgggatcaaaaagggcgatatggtgagcgaaaagggcttgtttgtggtt
atcgctgataataatggcagggaagccgctcgccattatatcgctaggggttctgagatt
ttaattgacgataatagcgaagtgagtgcaaatagccttatttctaagcccactacaaac
gcattaagcacgattgcgacatgggatccttacaatacccccattattgcggactttaag
ggtaaagtgagttttgtggatattatcgcaggggttacggtcgctgaaaaagaagacgaa
aataccggtatcaccagtttggtggtgaatgattacattccaagcgggtacaaaccaagc
ttgtttttagagggggttaatggcgaagaagtgcgttatttcctagagccaaaaacttct
attgctattagcgatggctctagcgtggagcaggctgaagtgttagcaaagatccctaaa
gcgaccgttaagtctaaagacattaccggaggtctcccgagggtttcagaattgtttgaa
gcgagaaaacccaaacctaaagatgtggcgatcctttctgaggttgatgggattgtcagc
tttggtaaagcgatccgcaataaagaacacatcattgtaacctctaaagatggccgctcc
atggattattttgtggataaaggcaagcaaattttagtgcatgcagacgagtttgtgcat
gcaggggaagcgatgacggatggggtaatctcaagccatgatattttaaggatcagcggc
gaaaaagagctttataaatacattgtgagcgaggttcagcaggtgtatcgcagacagggg
gtaagcattgcggacaagcacattgaaatcattgtgtctcaaatgttaaggcaagtgcgc
attttagacagcggggatagcaagtttattgaaggggatttagtcagtaaaaaactcttc
aaagaagaaaacgctcgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtg
cttttagggatcaccagagcggctattgggagcgatagcatcatttcagcggcttctttc
caagaaacgactaaagttttaacagaagccagtatcgctatgaaaaaagactttttggaa
gatttgaaagaaaatgtggtgttagggaggatgatccctgtgggaacaggtatgtataag
aacaagaaaatcgttttaagaacgcttgaagagggccctaaaaattga
DBGET
integrated database retrieval system
