KEGG   Homo sapiens (human): 7012
Entry
7012              ncRNA     T01001                                 
Symbol
TERC, DKCA1, PFBMFT2, SCARNA19, TER, TR, TRC3, hTR
Name
(RefSeq) telomerase RNA component
  KO
K22183  telomerase RNA component
Organism
hsa  Homo sapiens (human)
Pathway
hsa05200  Pathways in cancer
hsa05225  Hepatocellular carcinoma
hsa05226  Gastric cancer
Network
nt06232  Telomerase activity (cancer)
nt06261  Gastric cancer
nt06263  Hepatocellular carcinoma
nt06510  Telomere length regulation
  Element
N00239  Telomerase activity
N00240  TERT-overexpression to telomerase activity
N01475  Telomerase RNA maturation
N01476  Assembly and trafficking of telomerase
N01477  Telomere elongation
Disease
H00507  Dyskeratosis congenita
H01132  Aplastic anemia
H01299  Idiopathic pulmonary fibrosis
H02569  Pulmonary fibrosis and/or bone marrow failure, telomere-related
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    7012 (TERC)
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    7012 (TERC)
   05226 Gastric cancer
    7012 (TERC)
 09180 Brite Hierarchies
  09184 RNA family
   03100 Non-coding RNAs [BR:hsa03100]
    7012 (TERC)
Non-coding RNAs [BR:hsa03100]
 Other RNA
  Unclassified
   7012 (TERC)
SSDB
Other DBs
NCBI-GeneID: 7012
OMIM: 602322
HGNC: 11727
Ensembl: ENSG00000277925
LinkDB
Position
3:complement(169764610..169765060)
NT seq 451 nt   +upstreamnt  +downstreamnt
gggttgcggagggtgggcctgggaggggtggtggccattttttgtctaaccctaactgag
aagggcgtaggcgccgtgcttttgctccccgcgcgctgtttttctcgctgactttcagcg
ggcggaaaagcctcggcctgccgccttccaccgttcattctagagcaaacaaaaaatgtc
agctgctggcccgttcgcccctcccggggacctgcggcgggtcgcctgcccagcccccga
accccgcctggaggccgcggtcggcccggggcttctccggaggcacccactgccaccgcg
aagagttgggctctgtcagccgcgggtctctcgggggcgagggcgaggttcaggcctttc
aggccgcaggaagaggaacggagcgagtccccgcgcgcggcgcgattccctgagctgtgg
gacgtgcacccaggactcggctcacacatgc

KEGG   Homo sapiens (human): 5073
Entry
5073              CDS       T01001                                 
Symbol
PARN, DAN, DKCB6, PFBMFT4
Name
(RefSeq) poly(A)-specific ribonuclease
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
hsa  Homo sapiens (human)
Pathway
hsa03018  RNA degradation
Network
nt06510  Telomere length regulation
  Element
N01475  Telomerase RNA maturation
Disease
H00507  Dyskeratosis congenita
H02569  Pulmonary fibrosis and/or bone marrow failure, telomere-related
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    5073 (PARN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    5073 (PARN)
Enzymes [BR:hsa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     5073 (PARN)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     5073 (PARN)
SSDB
Motif
Pfam: CAF1 RNA_bind R3H NCBP3 RRM_1 T6PP_C
Other DBs
NCBI-GeneID: 5073
NCBI-ProteinID: NP_002573
OMIM: 604212
HGNC: 8609
Ensembl: ENSG00000140694
UniProt: O95453 B3KN69
Structure
LinkDB
Position
16:complement(14435701..14630260)
AA seq 639 aa
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLN
PQCIPYTLQNHYYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEP
LSEGRKKAKKLKRMKKELSPAGSISKNSPATLFEVPDTW
NT seq 1920 nt   +upstreamnt  +downstreamnt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcagtc
tctgcattaacaaatggttttgacactccagaagagaggtatcagaagcttaaaaagcat
tccatggactttttgctatttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacgaagtcatttaacttctatgttttcccgaaacccttcaatagatcc
tcaccagatgtcaaatttgtttgtcagagctccagcattgactttctagcaagccaggga
tttgattttaataaagtttttcgaaatggaattccatatttaaatcaggaagaagaaaga
cagttaagagagcagtatgatgaaaaacgttcacaggcgaatggtgcaggagctctgtcc
tatgtatctcctaacacttcaaaatgtcctgtcacgattcctgaggatcaaaagaagttt
attgaccaagtggtagagaaaatagaggatttattacaaagtgaagaaaacaagaacttg
gatttagagccatgtaccgggttccaaagaaaactaatttatcagactttgagctggaag
tatccgaaaggcattcatgttgagactttagaaactgaaaagaaggagcgatatatagtt
atcagcaaagtagatgaagaagaacgcaaaagaagagagcagcagaaacatgccaaagaa
caggaggagctgaatgatgctgtgggattttctagagtcattcacgccattgctaattcg
ggaaaacttgttattggacacaatatgctcttggacgtcatgcacacagttcatcagttc
tactgccctctgcctgcggacttaagtgagtttaaagagatgacaacatgtgttttcccc
agactcttggatactaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcggaattggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgccgaaggttttccaagttatgacacagcctctgaacaactccacgaggcaggc
tacgatgcctacatcacagggctgtgcttcatctccatggccaattacctaggttctttt
ctcagccctccaaaaattcatgtgtctgccagatcaaaactcattgaacctttttttaac
aagttatttcttatgagggtcatggatatcccctatctaaacttggaaggaccagacttg
cagcctaaacgtgatcatgttctccatgtgacattccccaaagaatggaaaaccagcgac
ctttaccagcttttcagtgcctttggtaacattcagatatcctggattgatgacacatca
gcatttgtttcccttagccagcccgagcaagtaaagattgctgtcaataccagcaaatat
gcagaaagctatcggatccaaacctatgctgaatatatggggagaaaacaggaagagaag
cagatcaaaagaaagtggactgaagatagctggaaggaggctgacagcaaacggttaaac
ccccagtgcataccctacaccctgcagaatcactattaccgcaacaatagttttacagct
cccagcacagtaggaaagagaaatttgagtcctagtcaagaggaagctggcctggaggac
ggagtgtcaggggagatttccgacactgagcttgagcagaccgattcctgtgcagagccc
ctctcagagggaaggaaaaaggccaagaaattaaaaagaatgaagaaggagctttctcca
gcaggaagcatctcgaagaacagccctgccacactctttgaagttcctgacacatggtaa

KEGG   Homo sapiens (human): 55596
Entry
55596             CDS       T01001                                 
Symbol
ZCCHC8, PFBMFT5
Name
(RefSeq) zinc finger CCHC-type containing 8
  KO
K13128  zinc finger CCHC domain-containing protein 8
Organism
hsa  Homo sapiens (human)
Network
nt06510  Telomere length regulation
  Element
N01475  Telomerase RNA maturation
Disease
H02569  Pulmonary fibrosis and/or bone marrow failure, telomere-related
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsa03041]
    55596 (ZCCHC8)
Spliceosome [BR:hsa03041]
 Complex C
  Other components
   Complex C specific factors
    55596 (ZCCHC8)
SSDB
Motif
Pfam: PSP zf-CCHC Herpes_BLRF2 DUF4201 DUF6262 DivIC zf-CCHC_4
Other DBs
NCBI-GeneID: 55596
NCBI-ProteinID: NP_060082
OMIM: 616381
HGNC: 25265
Ensembl: ENSG00000033030
UniProt: Q6NZY4
Structure
LinkDB
Position
12:complement(122471600..122500932)
AA seq 707 aa
MAAEVYFGDLELFEPFDHPEESIPKPVHTRFKDDDGDEEDENGVGDAELRERLRQCEETI
EQLRAENQELKRKLNILTRPSGILVNDTKLDGPILQILFMNNAISKQYHQEIEEFVSNLV
KRFEEQQKNDVEKTSFNLLPQPSSIVLEEDHKVEESCAIKNNKEAFSVVGSVLYFTNFCL
DKLGQPLLNENPQLSEGWEIPKYHQVFSHIVSLEGQEIQVKAKRPKPHCFNCGSEEHQMK
DCPMPRNAARISEKRKEYMDACGEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALG
VTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGTDGETEVGEIQQNKSVTYD
LSKLVNYPGFNISTPRGIPDEWRIFGSIPMQACQQKDVFANYLTSNFQAPGVKSGNKRSS
SHSSPGSPKKQKNESNSAGSPADMELDSDMEVPHGSQSSESFQFQPPLPPDTPPLPRGTP
PPVFTPPLPKGTPPLTPSDSPQTRTASGAVDEDALTLEELEEQQRRIWAALEQAESVNSD
SDVPVDTPLTGNSVASSPCPNELDLPVPEGKTSEKQTLDEPEVPEIFTKKSEAGHASSPD
SEVTSLCQKEKAELAPVNTEGALLDNGSVVPNCDISNGGSQKLFPADTSPSTATKIHSPI
PDMSKFATGITPFEFENMAESTGMYLRIRSLLKNSPRNQQKNKKASE
NT seq 2124 nt   +upstreamnt  +downstreamnt
atggccgcagaggtgtattttggcgatctagagctcttcgagccgttcgaccacccagag
gagtcgattccgaagcccgttcacactcgcttcaaggacgacgacggcgacgaggaggac
gaaaatggggtcggcgacgcggagctacgggagcggcttcggcagtgcgaggagaccatc
gagcagctccgcgccgagaatcaagaacttaaacgaaaattgaacattctgactcgaccg
agtggaatattggtgaacgatactaagttagatggacctatattacagattctattcatg
aacaatgctatttcaaagcaatatcatcaagaaatagaggaatttgtatcaaatttagta
aaaagatttgaggaacagcagaaaaatgatgtggaaaagacttcctttaatcttttgccc
cagccatccagtattgtgctagaggaggaccacaaagtggaagagtcctgtgccattaaa
aacaacaaggaagctttcagtgttgtaggaagtgtcctgtattttactaatttttgcctt
gataaattggggcaaccgcttctaaatgaaaaccctcagctttccgaaggatgggaaata
cccaagtaccatcaagtcttcagccacattgtttctctagaagggcaagaaatacaagta
aaggcaaaaaggccaaagcctcactgtttcaattgtggttctgaagaacaccaaatgaaa
gattgcccaatgcctcggaatgctgctcgaataagtgaaaagagaaaagagtatatggat
gcctgtggagaagcaaacaatcagaatttccagcagcgataccacgcagaagaagtagaa
gaaagatttggaagattcaagccaggagttattagtgaggaacttcaagatgcactaggt
gtgacagacaagagtcttccaccttttatctatcggatgcgccagctagggtacccacca
gggtggctcaaagaggctgaattggagaattcggggcttgcactctatgatggaaaagat
ggcactgatggggaaacagaagttggagaaatacaacagaataaaagtgtcacttacgat
ctctcaaaattggtcaactatcctggttttaatatatctactcccagaggaattccagac
gaatggaggatctttggttccataccaatgcaggcatgtcagcagaaggatgtgtttgcc
aattaccttacttctaacttccaagcgccaggtgtgaagtctggcaacaagaggtcttca
tctcactctagcccaggtagtccaaagaagcagaagaatgaaagcaactcagcgggatct
cccgccgacatggagctcgattcagatatggaggtaccacatggttctcagagcagcgaa
agttttcagtttcaaccaccattacctcctgacactcctccactcccccggggaactcct
ccacccgtcttcacccctccactcccaaagggcaccccgccgctgactcccagtgactca
ccccagaccagaacagcatctggagctgtggatgaggacgcactgactctagaagaactt
gaagaacagcagaggcggatctgggcagctcttgagcaggccgagagcgtaaacagcgac
tccgacgttcctgtggacacacctttaactggcaattccgttgcctcatcaccttgtcca
aatgagctagacctccctgtcccggagggaaaaacatctgaaaagcagacgctggatgag
cctgaggtaccagagatttttacaaagaaatcagaagctggacatgcctccagtccagac
tctgaggtgacatcactttgtcagaaggaaaaagcagagttggctccggtaaacactgaa
ggtgcccttcttgataatggcagtgtcgtaccaaactgtgacatcagcaatgggggcagc
cagaagctctttcctgcagacaccagtccttcaacggccactaaaattcatagccctata
cctgacatgagcaaatttgcaactggaatcacgccatttgaatttgagaatatggcagaa
tctactggaatgtacctcaggataagaagcttgttaaagaactcaccccgaaaccagcag
aaaaacaaaaaggcctctgaataa

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