Entry |
|
Symbol |
ARID1A, B120, BAF250, BAF250a, BM029, C1orf4, CSS2, ELD, MRD14, OSA1, P270, SMARCF1, hELD, hOSA1
|
Name |
(RefSeq) AT-rich interaction domain 1A
|
KO |
K11653 | AT-rich interactive domain-containing protein 1 |
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Organism |
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Pathway |
hsa03082 | ATP-dependent chromatin remodeling |
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Network |
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Element |
N01688 | ADRB3-UCP1 signaling pathway |
|
Disease |
H00048 | Hepatocellular carcinoma |
H00773 | Autosomal dominant intellectual developmental disorder |
|
Brite |
KEGG Orthology (KO) [BR:hsa00001]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
8289 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
8289 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
8289 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:hsa03000]
8289 (ARID1A)
03021 Transcription machinery [BR:hsa03021]
8289 (ARID1A)
03036 Chromosome and associated proteins [BR:hsa03036]
8289 (ARID1A)
Transcription factors [BR:hsa03000]
Eukaryotic type
Helix-turn-helix
ARID
8289 (ARID1A)
Transcription machinery [BR:hsa03021]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
8289 (ARID1A)
Chromosome and associated proteins [BR:hsa03036]
Eukaryotic type
Chromatin remodeling factors
BAF complex
8289 (ARID1A)
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SSDB |
|
Motif |
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Other DBs |
|
Structure |
|
LinkDB |
|
Position |
1:26696015..26782104
|
AA seq |
2285 aa
MAAQVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEG
PAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEP
PGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPG
LAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPG
SGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLT
SPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHA
PMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQ
PYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQ
QQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQST
TQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPP
QELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPG
VSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVP
GNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQ
IHTGMGSYQQNSMGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINPMGAGGQ
MHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQETAVA
MHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYSMGGTMANNSAG
MAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPER
KMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNL
NVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGS
MQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFNDGSDSTFQ
KRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPY
SRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMSTGAPQPNLMPSNPDSGMYS
PSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPP
AKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPATAT
AATERRPAGGPQNQFPFQFGRDRVSAPPGTNAQQNMPPQMMGGPIQASAEVAQQGTMWQG
RNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGSWPSHGTRQPPYGPSAP
VPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPV
PASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGL
LAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPG
QRTLLDPGRFSKVSSPAPMEGGEEEEELLGPKLEEEEEEEVVENDEEIAFSGKDKPASEN
SEEKLISKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFE
SKTELLPSRPHAPCPPAPRKHVTTAEGTPGTTDQEGPPPDGPPEKRITATMDDMLSTRSS
TLTEDGAKSSEAIKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKR
CVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQG
VSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQ
DPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKN
PVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQN
PPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLF
LIGQS |
NT seq |
6858 nt +upstreamnt +downstreamnt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccg
ccctcggagctgaagaaagccgagcagcagcagcgggaggaggcggggggcgaggcggcg
gcggcggcagcggccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggc
cccgccgtggggccgccgcagccgctgggaaaggagctgcaggacggggccgagagcaat
gggggtggcggcggcggcggagccggcagcggcggcgggcccggcgcggagccggacctg
aagaactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccg
cccggcggcggcggtggcggcagcagcgatggggtgggggcgcctcctcactcagccgcg
gccgccttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgcc
gtcgccgccgccgcggccgccgtcttccaccaacaacatggcggacaacaaagccctggc
ctggcagcgctgcagagcggcggcggcgggggcctggagccctacgcggggccccagcag
aactctcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagc
gcctaccccccgcccgccccggcctacgcgctgagctccccgagaggtggcactccgggc
tccggcgcggcggcggctgccggctccaagccgcctccctcctccagcgcctccgcctcc
tcgtcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggcccctcc
gcggccggcgggggaactccccagcccaccgccacccccaccctcaaccaactgctcacg
tcgcccagctcggcccggggctaccagggctaccccgggggcgactacagtggcgggccc
caggacgggggcgccggcaagggcccggcggacatggcctcgcagtgttggggggctgcg
gcggcggcagctgcggcggcggccgcctcgggaggggcccaacaaaggagccaccacgcg
cccatgagccccgggagcagcggcggcggggggcagccgctcgcccggacccctcagcca
tccagtccaatggatcagatgggcaagatgagacctcagccatatggcgggactaaccca
tactcgcagcaacagggacctccgtcaggaccgcagcaaggacatgggtacccagggcag
ccatacgggtcccagaccccgcagcggtacccgatgaccatgcagggccgggcgcagagt
gccatgggcggcctctcttatacacagcagattcctccttatggacaacaaggccccagc
gggtatggtcaacagggccagactccatattacaaccagcaaagtcctcaccctcagcag
cagcagccaccctactcccagcaaccaccgtcccagacccctcatgcccaaccttcgtat
cagcagcagccacagtctcaaccaccacagctccagtcctctcagcctccatactcccag
cagccatcccagcctccacatcagcagtccccggctccatacccctcccagcagtcgacg
acacagcagcacccccagagccagcccccctactcacagccacaggctcagtctccttac
cagcagcagcaacctcagcagccagcaccctcgacgctctcccagcaggctgcgtatcct
cagccccagtctcagcagtcccagcaaactgcctattcccagcagcgcttccctccaccg
caggagctatctcaagattcatttgggtctcaggcatcctcagccccctcaatgacctcc
agtaagggagggcaagaagatatgaacctgagccttcagtcaagaccctccagcttgcct
gatctatctggttcaatagatgacctccccatggggacagaaggagctctgagtcctgga
gtgagcacatcagggatttccagcagccaaggagagcagagtaatccagctcagtctcct
ttctctcctcatacctcccctcacctgcctggcatccgaggcccttccccgtcccctgtt
ggctctcccgccagtgttgctcagtctcgctcaggaccactctcgcctgctgcagtgcca
ggcaaccagatgccacctcggccacccagtggccagtcggacagcatcatgcatccttcc
atgaaccaatcaagcattgcccaagatcgaggttatatgcagaggaacccccagatgccc
cagtacagttccccccagcccggctcagccttatctccgcgtcagccttccggaggacag
atacacacaggcatgggctcctaccagcagaactccatggggagctatggtccccagggg
ggtcagtatggcccacaaggtggctaccccaggcagccaaactataatgccttgcccaat
gccaactaccccagtgcaggcatggctggaggcataaaccccatgggtgccggaggtcaa
atgcatggacagcctggcatcccaccttatggcacactccctccagggaggatgagtcac
gcctccatgggcaaccggccttatggccctaacatggccaatatgccacctcaggttggg
tcagggatgtgtcccccaccagggggcatgaaccggaaaacccaagaaactgctgtcgcc
atgcatgttgctgccaactctatccaaaacaggccgccaggctaccccaatatgaatcaa
gggggcatgatgggaactggacctccttatggacaagggattaatagtatggctggcatg
atcaaccctcagggacccccatattccatgggtggaaccatggccaacaattctgcaggg
atggcagccagcccagagatgatgggccttggggatgtaaagttaactccagccaccaaa
atgaacaacaaggcagatgggacacccaagacagaatccaaatccaagaaatccagttct
tctactacaaccaatgagaagatcaccaagttgtatgagctgggtggtgagcctgagagg
aagatgtgggtggaccgttatctggccttcactgaggagaaggccatgggcatgacaaat
ctgcctgctgtgggtaggaaacctctggacctctatcgcctctatgtgtctgtgaaggag
attggtggattgactcaggtcaacaagaacaaaaaatggcgggaacttgcaaccaacctc
aatgtgggcacatcaagcagtgctgccagctccttgaaaaagcagtatatccagtgtctc
tatgcctttgaatgcaagattgaacggggagaagaccctcccccagacatctttgcagct
gctgattccaagaagtcccagcccaagatccagcctccctctcctgcgggatcaggatct
atgcaggggccccagactccccagtcaaccagcagttccatggcagaaggaggagactta
aagccaccaactccagcatccacaccacacagtcagatccccccattgccaggcatgagc
aggagcaattcagttgggatccaggatgcctttaatgatggaagtgactccacattccag
aagcggaattccatgactccaaaccctgggtatcagcccagtatgaatacctctgacatg
atggggcgcatgtcctatgagccaaataaggatccttatggcagcatgaggaaagctcca
gggagtgatcccttcatgtcctcagggcagggccccaacggcgggatgggtgacccctac
agtcgtgctgccggccctgggctaggaaatgtggcgatgggaccacgacagcactatccc
tatggaggtccttatgacagagtgaggacggagcctggaatagggcctgagggaaacatg
agcactggggccccacagccgaatctcatgccttccaacccagactcggggatgtattct
cctagccgctaccccccgcagcagcagcagcagcagcagcaacgacatgattcctatggc
aatcagttctccacccaaggcaccccttctggcagccccttccccagccagcagactaca
atgtatcaacagcaacagcagaattacaagcggccaatggatggcacatatggccctcct
gccaagcggcacgaaggggagatgtacagcgtgccatacagcactgggcaggggcagcct
cagcagcagcagttgcccccagcccagccccagcctgccagccagcaacaagctgcccag
ccttcccctcagcaagatgtatacaaccagtatggcaatgcctatcctgccactgccaca
gctgctactgagcgccgaccagcaggcggcccccagaaccaatttccattccagtttggc
cgagaccgtgtctctgcaccccctggcaccaatgcccagcaaaacatgccaccacaaatg
atgggcggccccatacaggcatcagctgaggttgctcagcaaggcaccatgtggcagggg
cgtaatgacatgacctataattatgccaacaggcagagcacgggctctgccccccagggc
cccgcctatcatggcgtgaaccgaacagatgaaatgctgcacacagatcagagggccaac
cacgaaggctcgtggccttcccatggcacacgccagcccccatatggtccctctgcccct
gtgccccccatgacaaggccccctccatctaactaccagcccccaccaagcatgcagaat
cacattcctcaggtatccagccctgctcccctgccccggccaatggagaaccgcacctct
cctagcaagtctccattcctgcactctgggatgaaaatgcagaaggcaggtcccccagta
cctgcctcgcacatagcacctgcccctgtgcagccccccatgattcggcgggatatcacc
ttcccacctggctctgttgaagccacacagcctgtgttgaagcagaggaggcggctcaca
atgaaagacattggaaccccggaggcatggcgggtaatgatgtccctcaagtctggtctc
ctggcagagagcacatgggcattagataccatcaacatcctgctgtatgatgacaacagc
atcatgaccttcaacctcagtcagctcccagggttgctagagctccttgtagaatatttc
cgacgatgcctgattgagatctttggcattttaaaggagtatgaggtgggtgacccagga
cagagaacgctactggatcctgggaggttcagcaaggtgtctagtccagctcccatggag
ggtggggaagaagaagaagaacttctaggtcctaaactagaagaggaagaagaagaggaa
gtagttgaaaatgatgaggagatagccttttcaggcaaggacaagccagcttcagagaat
agtgaggagaagctgatcagtaagtttgacaagcttccagtaaagatcgtacagaagaat
gatccatttgtggtggactgctcagataagcttgggcgtgtgcaggagtttgacagtggc
ctgctgcactggcggattggtgggggggacaccactgagcatatccagacccacttcgag
agcaagacagagctgctgccttcccggcctcacgcaccctgcccaccagcccctcggaag
catgtgacaacagcagagggtacaccagggacaacagaccaggaggggcccccacctgat
ggacctccagaaaaacggatcacagccactatggatgacatgttgtctactcggtctagc
accttgaccgaggatggagctaagagttcagaggccatcaaggagagcagcaagtttcca
tttggcattagcccagcacagagccaccggaacatcaagatcctagaggacgaaccccac
agtaaggatgagaccccactgtgtacccttctggactggcaggattctcttgccaagcgc
tgcgtctgtgtgtccaataccattcgaagcctgtcatttgtgccaggcaatgactttgag
atgtccaaacacccagggctgctgctcatcctgggcaagctgatcctgctgcaccacaag
cacccagaacggaagcaggcaccactaacttatgaaaaggaggaggaacaggaccaaggg
gtgagctgcaacaaagtggagtggtggtgggactgcttggagatgctccgggaaaacacc
ttggttacactcgccaacatctcggggcagttggacctatctccataccccgagagcatt
tgcctgcctgtcctggacggactcctacactgggcagtttgcccttcagctgaagcccag
gaccccttttccaccctgggccccaatgccgtcctttccccgcagagactggtcttggaa
accctcagcaaactcagcatccaggacaacaatgtggacctgattctggccacacccccc
ttcagccgcctggagaagttgtatagcactatggtgcgcttcctcagtgaccgaaagaac
ccggtgtgccgggagatggctgtggtactgctggccaacctggctcagggggacagcctg
gcagctcgtgccattgcagtgcagaagggcagtatcggcaacctcctgggcttcctagag
gacagccttgccgccacacagttccagcagagccaggccagcctcctccacatgcagaac
ccaccctttgagccaactagtgtggacatgatgcggcgggctgcccgcgcgctgcttgcc
ttggccaaggtggacgagaaccactcagagtttactctgtacgaatcacggctgttggac
atctcggtatcaccgttgatgaactcattggtttcacaagtcatttgtgatgtactgttt
ttgattggccagtcatga |