Helicobacter suis: NHP194022_13480
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Entry
NHP194022_13480 CDS
T07888
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase RfaD
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
hsh
Helicobacter suis
Pathway
hsh00540
Lipopolysaccharide biosynthesis
hsh01100
Metabolic pathways
hsh01250
Biosynthesis of nucleotide sugars
Module
hsh_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
hsh00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
NHP194022_13480 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hsh01005
]
NHP194022_13480 (rfaD)
Enzymes [BR:
hsh01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
NHP194022_13480 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
hsh01005
]
Core region
NHP194022_13480 (rfaD)
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
adh_short
DAO
Cac1_C
Motif
Other DBs
NCBI-ProteinID:
BCD51677
LinkDB
All DBs
Position
complement(1310313..1311278)
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AA seq
321 aa
AA seq
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MPYIPDTLENTTIVITGGAGFIGSNLALYFQKHHPKARVIVVDKFRDPSLSSLGHFKNLI
GFKGEIITADITQDLSTLEEIDFNYLFHLAAISDTTCLNQELVMQTNHQAFLKLLKIAQN
KGARVIYASSAAVYGNTNAPNRVGLNEVPENVYGFSKLCMDRSTLAFETSTPIVGLRYFN
VYGPGEFYKGKTASMILQLGLQALQNKEVKLFEFGEQQRDFVYIEDVIQASVKAMVANQV
GVYNVGYGKSHSYNTIVEILQQELGDFKTTYIKNPYPFFQNHTCADIQSTHLDLDYTPNY
NLASGIKAYLPTIKKLAKTNA
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgccctacattccagatactttagaaaatacaaccattgttattacagggggagcgggt
tttattgggagtaatttagccctgtatttccaaaaacaccaccctaaagcccgcgttatt
gtagtagataaatttagagaccctagtttgagcagtttggggcattttaaaaacctgatt
ggatttaaaggggagattatcaccgcagacatcacgcaagatttaagtacattagaagaa
atagattttaattatcttttccacctagccgctatttcagatactacctgccttaaccaa
gaattagtcatgcaaactaaccaccaagcctttttaaaactccttaaaattgcacagaat
aaaggggcacgcgtaatttatgcctcctcagctgctgtttatggcaatacaaatgcaccc
aaccgcgtaggtttaaacgaagtacctgaaaatgtttatggtttttctaaattgtgcatg
gatagaagtactctagcgtttgaaacttcaacgcccattgtgggtttgcgctattttaat
gtctatggtccgggggaattttataaaggtaaaactgcctctatgattttacaactaggt
ttacaggccttgcaaaataaagaagttaagctttttgagtttggagaacaacaacgcgat
tttgtctatattgaagatgtgattcaggctagtgtaaaagctatggtagcaaaccaagtt
ggagtttataatgtaggctatggcaaaagtcatagctataacacgatcgtagaaatttta
cagcaagaattaggcgattttaaaaccacctatatcaaaaatccttatccttttttccaa
aaccacacctgtgcagatattcaaagcacgcatttagatttagattacaccccaaattat
aatctagcaagcggcattaaagcctatttaccaaccattaaaaaactggctaaaaccaat
gcttag
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