Hippoglossus stenolepis (Pacific halibut): 118114117
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Entry
118114117 CDS
T08308
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsp03016
]
118114117 (cdkal1)
Enzymes [BR:
hsp01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
118114117 (cdkal1)
Transfer RNA biogenesis [BR:
hsp03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
118114117 (cdkal1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
118114117
NCBI-ProteinID:
XP_035020256
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All DBs
Position
8:complement(11246745..11475802)
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AA seq
564 aa
AA seq
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MPSTCDSLIEDIEDMVSSSDPTPQERLTARKSIMPRSRKRKELPINEELQADSLIPGTQK
IWMKTWGCSHNSSDGEYMAGQLAASGYKMTDDPAEADLWLLNSCTVKNPAEDHFRNSIKK
AQEQEKKVVLAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAIKGHSVRLLGQKKDG
GRRLGGARLDLPKIRRNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVDDFKRVVDFLKERVPGVTIATDIICG
FPGETEEDFQETVDLVKCYRFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKELSHLFH
SYNPYDHEVGERQHVLVTEESFDAQYWVSHNKFYEQVLVPKRDEFKGKMVEVDIYEAGKH
FLRGRPVDDSKLFTPSIAAPLQKGEVSGLVQEQISNGIQSCASISSSSTLLIGSYSLDRE
ALKKLGIGLALAAAVLAFILEKVF
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccacctgtgactctctgattgaagacatcgaagacatggtgtcttctagtgac
cccactcctcaagagagactgactgcaagaaagagcatcatgccaaggtccaggaagaga
aaagagcttccgatcaatgaggagctccaagctgacagtttgatccctgggacacagaag
atctggatgaaaacatggggctgcagtcacaacagctcagatggagagtacatggctgga
cagctggctgccagtggatacaagatgaccgatgacccagcagaagcagacctgtggttg
ctgaacagctgcactgtgaagaaccctgcagaggaccacttcagaaactcaatcaaaaaa
gctcaagaacaggagaaaaaggtggtattagcaggttgcgttccccaggcccagccacgt
atggactacctcaaaggactcagcatcattggggtccagcagattgatcgagtggtggaa
gtcgtggatgaggcaattaaaggccactcggttcggctgttaggtcagaagaaagatgga
ggccggaggctcggaggagcgagactggacctgcccaagatcaggaggaacccactcatt
gaaatcatctccattaacactgggtgtctgaatgcttgtacctactgcaagaccaagcat
gccagaggagacctggccagttatcccattgaggaactagtggagagagccagacagtct
ttccaggagggagtgtgtgagatctggttgaccagtgaagacacaggagcttatggtcga
gacataggaacagatctgcccacgttgttgtggagactggtggaagagattcctgaagga
gccatgctgaggctgggtatgaccaacccaccctatatcctggaacacctagaggagatg
gccaagatattgaatcatccgcgtgtctatgccttccttcatattcccgtgcagtcggcc
tcagacagcgtactgatggacatgaagagggagtattgcgtcgacgacttcaagagagta
gtggacttcctcaaagagagggtcccaggtgtaaccatcgctactgatataatctgcggt
tttcccggtgagacagaggaagacttccaggagacggtagacttggtgaaatgctacaga
ttccccagtctcttcatcaaccagttctacccccgacctggtacacctgccgccaagatg
gagcaagtaccagcacaagtgaagaagcagaggactaaagaactgtcccatctcttccac
tcctacaacccatacgaccacgaggttggagagaggcaacatgtgttggtgacagaggag
tcgtttgatgcccaatattgggtgtctcacaacaagttctatgaacaggtgctggtccct
aagagggatgagttcaaagggaagatggttgaggtggacatctacgaggcaggaaaacac
ttcctgagaggccggccagtggacgacagtaagctgttcaccccctccattgcagcacca
ctacagaaaggagaggtgtctggcctggtgcaggaacagatttccaacggcatccaaagt
tgtgcttctatttcctcttcgtccactttgttgatcggctcgtacagtctagacagggag
gctctgaagaagctggggatcggactcgctctggctgcagctgtcttggcctttatcttg
gagaaggtgttctga
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