Hippoglossus stenolepis (Pacific halibut): 118117752
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Entry
118117752 CDS
T08308
Name
(RefSeq) nucleoprotein TPR isoform X1
KO
K09291
nucleoprotein TPR
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118117752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118117752
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118117752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
GAS
Motif
Other DBs
NCBI-GeneID:
118117752
NCBI-ProteinID:
XP_035026164
LinkDB
All DBs
Position
11:3123622..3153862
Genome browser
AA seq
2525 aa
AA seq
DB search
MAAVLLQVLERTELNKLPKGVQNKLEKFVTELQNANEALKTLHERFKADSEQQYFDIEKR
LSESQEQILSATRDLQTLKEENKKLNEELSTLKGIEGDTFQDKTPQQQTKTKYEIEAEKR
ELARLLEKRTHEVENLTQDVNSLNEKLTETNKVKMELQLKLDEIQSSETSLQHREKRMEQ
EKELLEKKIEWSTAELKNKTDELLNTNRDKGKEILELQSSLKNTKEQVTTLESQLISLKQ
TSESQSKRADDLNNKLKQAKDERSAMEEKYRNELNAHIKLSSLYKGAATDMETKNQELCR
AVEELSKVVKDTGEANKTLEKKVSEGAELKTRLEAELKEKIKKMEKELENVTMKASGKHC
CVPSLTEEQLDHMCPSAAAIAAIVKPGMKFFDLYNAYAECQTHLQLEKQETNRVSRVLDE
IVQEVESKAPVLKRQRQEYESMQRSMASLCNKLEQARMEIHGLQKEKEETKQRCEALERE
KLRVERQLDDTSTQVCVLLAELEEARGNRVIKTDSSSADISSTSEVNNPRQLSFRSVEEL
QKQNQSLLGRLRELEQEKDREQSRVTSARVSELEASVDKLQKEVEHLREQRNQQKQLADS
NARQRDMYKALLTHSTGFSLPPQGLESSSQPAHVRPSAPGTRSTPQRAAAVEAAQSTQAK
AALKQLNDAFSLYKKEKAENDRMLNETNDRLQSQITELSSSHAKLTSQLEFSNKRYEILQ
ETVSAYRREISALQDRNQKMSATAQRHEHIIHTMTQDLRQANEKLSLEEVRVVNVTKERD
MLRQAESRLTREKEAILAEQRNQNLLLTNLKTIQLTMERAETETRQRLNNKIEHLEAELA
SMKSRMDQEVAQRHSLGRTMDAQLLEAKKQLETQNILQQRTRELLRSSEQQVATLKTQLA
SASSSEAVTSSSNTTTPATRAAPVRAQLRVRPQAPAASQQPPSQSEQEIAEVRGLLRTAE
ELNSELAEQLKNANATVDQYRAVVLTLEDSLKKEKESRSPLEIRLKESEEVQKQLEKRIV
EVEKMKQREQDEGRKAVDAVEKQVCELQRNLKTSQMEQQDALERAAASLTQEQKATQDSL
LQTKLASEAQSKYERELMLHAADVEALQELKKRIQQDVAQKRELEEQINKTSSLLQEKTA
ALNTLEKQLKDDLSNQSRRCEELGKQNALLHQQMDDMASKSRQQQQQQQFDLSFSEEGKT
TEQILEILRFVRQEKQIAVARCEVSEGETLRYKQRVEHQDRELKEQQDTLNAERQKMQAT
AKTLVQQEEQLKKMSTISALQENNRMLKMNRDKLQQELQQAQAKVTKLQSDISPLHNSLS
LLSEKNGSLQADRRLLEEDLKHWKAKAQLLASQRKDGDVEEKQKLTNEREAQQRRIAQLA
EETAKLKTELARSSASSNSTQSQLQGLRDSVAQQISEKETLKKDLETKRTEILEKNKTIT
QVKKIGRRYKTQYDELKVQHDKLVAETASKAGSEAAPSQEVQQELAKAQEERNKAREELK
TLKEDVQKKQQETHKALQELEEAQKENQKTKEKSQEVQNQITKNQNQLTQLQSQLSQTQS
QLQQNQNQLTQSQKELQQAKTHTQQVQNQLKSAQTQAQARQSQNQLLQKELQQGKEALQQ
SLASQKELQQTHQTNQQSHNQEVGNLKTTLSQSEGKATELQGQLDSLQKTVGEREADIKR
LQEQLNEANQANEASQATQAKSFQASDANTAGDTNKAQQEEVAKLRQELLDCKNKEEQLR
QQISDKEEKTKKAFMGAKTKISQLISAKEQLSKETEELKQNKEELEGRVNALKSQYEGRL
LRLDRELRELRETQSQSEPREEPHDQSGSKVVDQPRSTDQRQISLKSPAQDRGGSSLSDP
PTANIRPTPSTPSPSNKPSPSPGSKATPRASIRPMVTPATIPIPTPTATVMPTTQTDSQE
VQISTGVCVHSTTSSLVSAPTSITQPTSLQATAFVQPTQQQAASQEAGSSMDTERPSTSS
SVIGAAGSKRAREEEEEEEQEEEEEESRPESSHTSPTTKKLRLKPSLALEMEGDEEMEGE
LRDEGEQQDSPDDSQELPEEGFPILAEDEEDIEEEGVSQSVPSYQMSSQGSTIIRDVIVI
DTDSESRESKDGEEKQEDEEEEEEEEEGDEYKEEEEDDEDEDDAGDGEMRGGDESNERSG
AEDEGEEEDPSEATNAEEDVGGASSDSQHASEPPQSSEGSSSATSESDPVRDLVHLPPTS
SSISSPSSSLTPRLPHPRRPTHSLPPRLYIQPPAPELGPPHMQRQSSQLRRTSVGRGLQL
TPGIGSTQHFFDDDDRMVPSTPTLVVPHRTDGFAEAIHSPQVAGLSTRFRFGPPEDLLPQ
TSASHSDLGQLASQGGLGMYESPLFLAAHDEDGGGRSVPTTPLQVAAPVTVFTESLPSDS
GDNMASQSVPMVTASTGMASAADDIDEVFVEQEAEGPGIESSLESQTDMESTGQQSDDAS
LPSTSQDPDTSSVTQRRMMSSQSLISSLSGRGTRGGRGEARMFLSRRGTYSRGGRGGAMG
RGGIA
NT seq
7578 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtgctgctgcaggtcctggagcggacggagttaaacaaactcccgaaaggc
gtccagaacaagctggagaagtttgtgacggagctgcagaatgctaacgaggcgctgaag
acactgcacgagcgcttcaaagcagacagtgagcagcagtactttgacatcgagaagaga
ctgtcagagagccaggaacagatcctgtcagccaccagagacttgcagaccctgaaggag
gaaaataagaaactcaatgaagagctgagtactctgaaaggaatagagggagataccttt
caagataaaacaccacagcagcagacaaagaccaagtatgagattgaggcagagaagagg
gagctggcgaggttgctggagaagagaacacatgaggtggagaaccttacacaggatgtg
aatagtctaaacgagaagctgactgagacaaacaaagtgaagatggagctgcagttgaaa
ctggatgaaatacaatcatctgagacatcgctacagcaccgggagaagcgtatggagcag
gagaaagaattactggagaagaaaattgagtggtcaaccgcagagctgaagaacaagacc
gatgaactgctcaacaccaacagagacaaaggcaaagagatactggagcttcagagtagt
ctgaagaacaccaaggagcaggtgaccacactggaaagtcagctcatttctttgaagcaa
accagtgaaagccaaagtaaaagagctgatgacctcaacaacaaactcaaacaggctaaa
gatgagcggagtgccatggaggagaaataccgcaatgagcttaatgctcatatcaagttg
tcttcactgtacaagggggcagcaacagatatggagacaaaaaaccaagaactttgcaga
gctgtggaagagctcagcaaagttgttaaagacaccggggaggccaataagactctggag
aagaaggtgtctgagggagcagaactgaagacacggcttgaggcagagctgaaggaaaaa
atcaagaaaatggagaaagagctggaaaatgtcacaatgaaggcttctggtaaacactgc
tgtgtgccttctctgactgaggagcagctggaccacatgtgtccttcagcagctgccatt
gctgcgattgtaaagcctggcatgaagttctttgacctgtataatgcctatgcagagtgt
cagacgcatcttcagcttgagaaacaggagaccaacagagtgagccgagtgctggatgag
atcgtccaggaagtcgagtccaaagcacccgtcctgaaacgtcagagacaggagtatgag
agcatgcaaaggtccatggcttccctgtgcaacaaactggaacaggctcgaatggaaatc
cacggtttgcaaaaagagaaagaagagaccaagcaacgctgtgaggcattggagagagaa
aaactgagggtagagagacagttagatgatacatctacacaggtgtgtgttcttctggcc
gagcttgaggaagccagaggtaatcgggtgatcaagactgacagcagctccgccgacatt
tccagcacctctgaagtcaacaacccacgccagttgtctttccgcagtgttgaagagctg
caaaagcagaaccagagccttctgggaaggctgagggagctggagcaggagaaggacaga
gagcagagccgtgtgacttcagcacgtgtgtctgaattggaggccagtgtggataaactc
cagaaggaggtggagcatctgagagagcagaggaaccagcagaaacagctggctgactcc
aacgccagacagagagacatgtacaaggccctgttgactcacagcactggcttcagcctg
cctcctcaaggtctagagtcctcatcccagcctgcacatgttcgtccttcagccccagga
actcgctctactccacaacgagctgctgccgtcgaggcagcacagagtactcaggctaaa
gctgctttaaaacagctcaacgatgccttcagtctgtataaaaaagagaaggcagagaac
gacaggatgctgaatgaaacaaacgacagactgcagagccagataacagaactcagctcc
agtcacgccaagctgacttctcaactggagttcagcaacaagaggtatgagattctccag
gagactgtatcagcctaccgcagagagatctctgcccttcaggacaggaaccaaaaaatg
tctgctacggcccaacgacacgagcacatcatccacacaatgacccaggacctgcggcag
gctaatgaaaaactgtcactggaagaggtgcgtgtagtgaacgtgaccaaagagagagac
atgttaagacaggcagagagtcgactgactcgagagaaggaagccatactggctgagcaa
cgtaaccagaacctacttctcaccaacctcaagacaatacagttgactatggagcgagcg
gagacagagacccgccagcgactgaacaacaagatcgagcatctggaggcagagctagct
tccatgaagagcaggatggaccaggaagttgcacaaagacattccctcggacgaactatg
gatgctcagctgttagaagccaagaagcagcttgagacccagaacatcctgcagcagaga
accagggagttgttgcgcagctctgaacagcaggtggcaacactgaaaacacagctggct
tctgcttcatcctctgaggctgttaccagctccagcaacaccaccaccccagctaccaga
gctgcacccgtcagagctcaactgagagtacgccctcaagcgccagcagcctcccagcag
cctcccagccaatcagaacaggagattgcagaggtgagaggtcttctccgtactgctgag
gaactgaacagtgaactggcagagcagctgaagaatgccaatgctactgtggatcagtac
agagccgtggtactgactctggaagacagtctgaagaaagaaaaggagtcccgctccccc
ctggagatccgactgaaggagtcggaggaggtgcagaagcagctggagaagaggattgta
gaggtggagaagatgaagcagcgggagcaggatgaggggaggaaagctgtggacgcggtg
gagaaacaagtgtgtgagctgcagcgcaatctgaagaccagtcagatggaacagcaggac
gcgctggagagagcagctgcttctcttacacaggagcagaaggccacacaagacagtctg
ctgcagactaagcttgctagtgaggcgcagtccaagtatgagcgggagttgatgcttcat
gctgctgatgtggaggctctgcaggagctcaagaaaagaattcaacaagacgtggcacag
aagagggagttagaggagcaaataaacaagacgtcctccctcctgcaggagaaaactgct
gcattgaacacactggagaaacagctgaaggatgacctgtctaatcagagtcggcgctgt
gaggagctggggaagcagaatgctctcttgcaccagcagatggatgacatggcctccaag
agtcgtcagcagcagcagcagcagcagttcgacctgtcattcagtgaggaaggaaagacc
actgaacagattctagaaatactcaggtttgtgcggcaggagaaacagatagctgtggct
cgatgtgaggtgtcggaaggagaaactcttcgctacaaacagcgagtggaacaccaagac
agagaacttaaggagcaacaggacaccctgaatgctgagaggcagaaaatgcaggctaca
gctaagactctggtccagcaagaagagcaactgaagaagatgagcactatcagtgctcta
caagaaaacaacaggatgctgaaaatgaacagagataagctgcagcaggagctgcaacaa
gcgcaggctaaagtgacaaagctgcagtcagacatcagtccactgcacaactctctgtct
ctgctgtcagaaaaaaatggctccctgcaggctgataggaggcttctggaagaagacctc
aaacactggaaggccaaagcacagctgctggccagccaacggaaagatggagatgttgag
gagaaacaaaaactgaccaatgagagagaagctcagcagagacgcatcgcacagctcgct
gaagagacagccaagctgaagactgaactggccagatccagtgccagcagtaactcaact
cagtctcagctgcaaggcctcagagactctgtggcccaacagatatcagagaaagaaact
ctgaagaaagacctggaaacaaaaagaactgagatcctggagaagaacaagaccatcacc
caggtgaagaagattggacgacgctacaagacgcagtatgatgagctcaaagtccaacat
gacaagctggttgcggaaacagcatctaaagcagggagtgaggcagctcctagtcaggag
gtgcagcaggagctggccaaagcccaggaggagcgcaacaaggccagagaggagctgaaa
acactgaaagaagatgtgcagaagaaacagcaagagacccacaaggccctgcaagagctg
gaggaggcgcaaaaggaaaaccagaagaccaaggaaaagtcccaggaggttcaaaaccag
attacaaagaaccagaaccaactcacacaattgcagtcccagttgtcgcagacccagtct
cagctgcagcagaatcagaaccagctgacccagagtcagaaagagcttcaacaagccaag
acccacacccagcaggtacaaaaccagttaaaatcagctcaaactcaagctcaggcccgt
cagagtcagaatcagctgctccagaaggagctccagcaggggaaagaagcgctccagcag
agcctcgccagtcagaaagagctgcaacagactcatcaaaccaatcaacaaagccacaac
caggaagttggcaatctcaagaccactctaagccaatcagagggcaaggcgactgaactc
cagggacagctggacagtctgcagaagactgttggtgagcgtgaagcagacatcaagcgt
ctgcaggagcagctgaatgaagctaaccaggccaatgaagctagtcaagccacacaggcc
aaaagtttccaggccagtgatgctaacacagctggtgacaccaacaaggctcaacaagag
gaggttgctaaactcagacaagagcttttggactgtaagaacaaagaggagcagctgaga
cagcagatttctgataaagaagaaaagaccaagaaggccttcatgggagctaagaccaaa
atcagccagctcatcagtgccaaagagcagctcagtaaggagacagaagaactgaaacag
aacaaggaggagctggaggggagagtaaacgccctcaagtctcagtacgaaggtcgactt
cttcgcctggacagagagctgagagaactgagggagacacagtcacagtctgagcccaga
gaggagccacatgaccagagtggctctaaggtggtggatcagccgagatccacagaccag
agacagatatctttgaagagtccagcccaagacagaggaggctctagtctgtctgatcct
cccactgctaacatccgcccaaccccaagtactccatctcctagcaacaagcccagcccc
tcccctggcagcaaggccacaccccgggccagtatccggcctatggttaccccggcaact
atcccaatcccgacacctaccgccaccgtcatgccaaccacacaaactgacagtcaagag
gtgcaaattagcacaggagtctgtgtacactccaccacctccagtctggtgagcgcaccc
acctccataactcaaccaaccagcttacaagccacagcttttgttcagcccacccagcag
caggcagccagtcaggaagcagggtccagcatggacacagagcgaccatccacgtcctct
tctgtgattggtgcagcaggttcaaagcgagccagagaggaggaggaggaggaggagcag
gaggaggaagaagaggagagcagaccggagagttcccacacatcaccgaccactaaaaaa
ctacgactaaaaccatcattagcactggagatggaaggtgatgaggagatggaaggagaa
ctgagggatgagggggaacaacaggattcaccagatgacagtcaggagcttccagaagag
ggtttccccattttagctgaagatgaggaggacattgaagaagaaggcgtgtcccagtct
gtcccctcttaccaaatgtcgtctcagggctccactataatccgagatgtcattgtgatc
gacacagacagtgaaagccgagagagcaaagatggggaggagaagcaggaggacgaagag
gaagaggaggaggaggaggaaggagatgagtataaggaggaagaggaggatgatgaagat
gaggatgatgctggtgatggtgagatgaggggaggagatgaaagtaatgagaggagcggg
gctgaagatgagggagaggaggaagatccatcagaagccaccaacgctgaggaggatgtg
ggtggagcgtcgtcagactcccagcatgcctctgagccgccgcagagcagtgaaggcagc
agcagcgccacatcagagtctgaccctgtccgagaccttgtacacctccccccaacttcc
tcctctatatcctcaccctcctcctcccttacaccccgcttgccacacccccgtaggccc
acacactccctcccaccaaggctttacatccaacctccggctccagagctgggaccccca
cacatgcagagacagtcctctcagctccgtagaacatcagtaggacgtggacttcaactc
acccctggaatcggcagtacacaacatttctttgatgacgacgacagaatggttcccagt
actcccactctggtggtcccacaccgcactgatggctttgctgaggctatacattctcct
caggtagcaggtctctctaccaggtttagatttggtcctccggaagacctgctgcctcaa
acatcagcgtcacactctgacctgggacaactggcctctcaaggaggtttgggtatgtat
gagtctcctctgttcctggctgctcatgatgaagatggaggaggaaggagtgtccccacc
acgcctttacaagtggctgcaccagtgacagtcttcaccgagtcgctgccttcagacagt
ggtgacaacatggcctcacagtctgttcccatggtcacagcctccacggggatggcttcc
gctgcagatgatatagatgaggtgttcgtggagcaagaagcagagggacctggtattgag
tcgtctttggaaagccagacagacatggagtcaacagggcagcagagtgatgatgcatca
ctgccatctaccagccaagaccccgacaccagcagtgttactcagcggcgtatgatgagc
agccaatccctgatcagcagcctgtcaggcagaggaaccagaggagggaggggggaagcc
aggatgttcctcagccgcagagggacttactctcgtggaggaaggggaggagccatgggc
agaggaggcattgcctaa
DBGET
integrated database retrieval system
