Hippoglossus stenolepis (Pacific halibut): 118118862
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Entry
118118862 CDS
T08308
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118118862 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118118862 (msh6)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
118118862 (msh6)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
118118862
NCBI-ProteinID:
XP_035028205
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Position
12:10378404..10386319
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AA seq
1384 aa
AA seq
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MAKQSSLFSFFAKSPPPASKPKPKPSPSPTEADLPSSVEKSSSSPKEQARQQQQAKSNRV
KPKSESRAAKGGFKKLFGDKAAAAKESSSTCSFSAGALVWAKLEGHPWWPCMVVPQPLTG
QQMRGRGRAQRIHVHFFDEPPTRGWVSTKYIRAYQGSDSSDAKTGGVFFSAKPVIQHAME
LADGVMFDSPEKRIQMPLCTDPSDDEDEYEEEMEVDKSTLTDEELSDEDDQEHEEVKSSK
VSRRSSRASTEKSNKAKRRRIVVASDSDDSGDEFKPEQAASSSEDEEEEGTVSSEEEEEE
KEEKEESMHESKVESPIKPAKRKRPEEKSASAKPKLATTPSAAPKRAPAAVAADTKSRLS
AFSAPDNFDSQANSSGSGGAATVWDHDKLEWLQDGRRKDKQRKRQSEDDYDPSTLYVPED
FLNRNSPGMRRWWQLKSEMFDTVIFYKVGKFYELYHVDAVIGVNELGLTFMKGNWAHSGF
PEIGFGRFSDVLVQKGYKVARVEQTETPEMMETRCKTMFKPTKFDRVVRREVCRIITRGT
QTYSVLDGAPSESQSKFLLSLKEKAEEDSSGQCRTYGVCFVDTSVGYFHVGQFPDDRHCS
RLRTLIAHFAPVEVLFERGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEE
DYFKDTTGKEQGAGNHFLPPLLKKMTSESDSLCLTPKEGYEMALSALGGCIFYLKKCLVD
MELLSMANFEEYVPVDVEMEKAAGPASFFARTRQRMVLDGVTLANLEIFQNGSGGTEGAL
LERLDTCATPFGKRLLKQWLCAPLCNPTSVRDRLDAVEDLMGAQAQATEVSDLLKKLPDL
DRLLSKIHSIGTPLKGQDHPDSRAVLYEEVTYSKRKITDFLSALEGFKTMQEIVSILAPM
TSEFRSSLLRQVVSLKSENDGLFPDLSAELRRWETAFDHQKARTTGIISPKLGFDPEYDQ
SLTGVQNCERELLDYLDRQKKRLGCKNMAYWGTGRNRYQMEVPDSFSDRKIPEEYEVKST
KKGWKRYVTEETERMFSELQGIEEKRDAALKDCMRRLFFNFDKDYREWKTGVECMAVLDV
LLALSRYSQDGDGPMTRPQLVLPEGNNQVAPFVDLVGSRHPCVTKTFFGDDFIPNDIFIG
SDETDEERSPALCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFTR
LGASDNIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVNELA
EKICCRTLFSTHYHSLVEDYTNNPAVRLGHMACMVENECEDPSQETITFLYKFISGACPK
SYGFNAARLANLPEEVIQSGHRKAREFEKGTLSLRLFKKLCQFAEDATKGGTHFHSLVQM
LNNV
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctctctgttcagcttcttcgccaagtcgccgccgccggcctccaag
ccgaagccgaagcccagtccctctccgaccgaggcggacctgccctcctcggtggagaag
tccagctcgtccccgaaagagcaggcgagacaacaacaacaagccaagagcaaccgagtc
aaaccgaagagtgagtccagggctgcgaaaggtggattcaagaagctgttcggagacaag
gccgctgcagctaaagaaagcagctccacatgctcgttcagtgccggtgccctcgtgtgg
gcaaaattggagggacacccttggtggccatgcatggtggtaccccaacctctgactggt
cagcagatgagaggccgcggtcgagcgcaacgcattcacgtccatttcttcgatgaacct
cccaccagaggatgggtcagcaccaaatatatccgagcgtatcaaggctctgacagcagt
gatgccaaaaccggcggggtgttcttcagcgccaagcctgtgatccaacatgcgatggaa
cttgctgacggagtcatgttcgacagccctgaaaaaagaatccagatgccgctctgcaca
gacccatctgatgatgaagatgagtatgaagaagagatggaggttgacaaatcaactcta
actgatgaagagctcagtgatgaggatgaccaggaacatgaggaagtgaagtcatccaaa
gtcagtcgccgttcatcccgggcttcaacagaaaagagcaacaaggccaagcgacgtcgc
attgttgttgcctcagacagtgacgactcgggtgatgaatttaaaccagaacaagctgct
tccagcagtgaggatgaagaggaagaaggaacagtgagtagtgaagaggaggaagaggag
aaagaggagaaagaggagagcatgcatgagtccaaggtagaaagccccatcaagcctgcg
aagcgcaaacgtcctgaagaaaagtcggctagtgcaaaacccaaactggcaactacccca
tctgctgcgcctaaacgagctccagcagctgtcgctgcggacacaaagtcacgcttatcc
gccttctctgcccctgacaactttgacagccaagcaaatagttcaggcagcggtggagca
gcaacagtttgggaccatgacaaactggaatggttgcaggacggccggaggaaagacaag
caaaggaagcgacagtccgaggatgactacgacccttccaccctgtacgtgcctgaagac
tttctgaacagaaactctccgggtatgcgtcggtggtggcagctcaaatctgagatgttt
gatacagtcatcttctacaaggtgggcaagttttatgagctgtaccacgtggacgctgtg
attggagtcaacgagctgggactgaccttcatgaaggggaactgggcacactcgggtttt
ccagagattggctttggccgtttctcggacgtactggtccagaaaggctacaaggtggct
cgagtggagcagacagagaccccggagatgatggaaactcgctgtaagaccatgttcaag
cccacaaaatttgaccgtgtggtgagaagagaggtgtgccggattatcactcgcggaacc
caaacctacagtgtgttggacggcgccccctcagagagtcagagcaagttcctgctgagt
ttaaaggagaaggcagaagaggacagctctggtcaatgtcgcacctatggagtctgcttt
gtagacacgtctgtgggttattttcacgtgggtcagttcccagacgatcgtcactgctca
cgcctgcgcaccctcatagcccactttgcaccagttgaggtgctctttgaaagggggaac
ccgtccgtcgaaacacgcaaaatactgaaggcctctctatcctctgctctgcaggaaggg
cttaatgcaggaacgcagttctgggacgcacagaagacccttaaaaccctctcagaggaa
gactacttcaaagataccacaggcaaggagcagggggctggaaaccactttctgcctcct
cttttgaagaagatgacctctgagagtgattcactgtgcctcactcctaaagagggctac
gagatggctctctcagcactgggtggatgcattttctacctgaagaaatgtctggtagat
atggagctgctctccatggccaactttgaagaatacgtccctgtcgacgttgagatggag
aaagctgccggacccgccagtttctttgcccggactcgtcagcgaatggtcctcgatgga
gtgacgctggcaaacttggaaatctttcagaatgggtcaggaggaaccgagggggcgcta
ctggaacgtttggacacatgcgctaccccatttggcaagaggctgctgaagcagtggctc
tgtgctccgctgtgtaacccaacatccgtgagggacagactggatgccgttgaggacctg
atgggagctcaggcccaggctactgaggtctcagacctgctgaagaaactcccagacctg
gaccgtctcctgagtaaaatccacagcattggaactcctctgaagggccaggaccaccct
gacagcagagcggttctctatgaggaggtcacctacagcaaacgcaagataacagacttc
ctctctgcactggaaggtttcaaaactatgcaggaaattgtttctatccttgctcccatg
acgagtgaatttcgctcctcgctgctccgtcaagttgtcagtctgaaaagtgagaacgac
ggcctctttcctgacctctctgccgaactccggcgctgggagacggcttttgaccaccag
aaagcccgcaccaccggtatcataagcccaaaacttggctttgaccccgagtacgaccaa
tccctgaccggagtccagaactgtgaacgagagctgctggattacctggacagacagaag
aagaggcttggctgtaaaaacatggcctactggggaacaggaaggaaccgctaccagatg
gaggtgcccgacagcttctccgatcggaaaattcctgaagagtacgaggtgaagtctaca
aagaaaggctggaagcgctacgtgacagaggagactgagcggatgttttcagagctgcaa
ggaattgaggagaagagagacgctgccttgaaagactgcatgaggaggctcttcttcaac
tttgacaaagactacagagagtggaagactggtgtcgagtgcatggcagtgcttgatgta
ctgctggccctgtcacgctacagtcaggatggagacggaccgatgaccaggccgcagctg
gttctccctgagggtaacaaccaggtagcgccctttgtggacctcgtcggatcccgccac
ccgtgtgtcaccaagaccttctttggtgacgacttcattccaaatgacatctttatcggc
agcgacgaaactgacgaggagagaagtcccgcgttgtgtgtccttgtcacgggaccaaac
atgggtggaaagtccactctcatgagacagtgtgggcttgtgatcatcctggctcagctg
ggttgctacgttcctgctgagagcctgcgcttcacaccagtcgacagagtcttcaccaga
ctgggagcctctgataacattatggctggagagagcaccttctttgtggagttaagtgag
actgccagcatcctgcaccatgccaccaagcattcactcgtgctcctggatgaattagga
aggggcacagccacatatgatggcacagcgattgccagtgctgttgtgaatgaactcgct
gagaagatctgctgtcgcaccctcttctccacacattaccactccctggtggaggattac
accaacaaccctgctgtgcggttgggccacatggcctgcatggtggagaatgaatgtgag
gatccaagtcaggaaaccattacattcctctacaagttcatcagcggtgcttgtcccaag
agttacggcttcaacgctgctcgacttgcgaacctcccagaggaggtcatccagtcagga
cacaggaaggccagagagtttgagaagggcaccctgagcctcagactgttcaagaagctc
tgccagttcgctgaagatgccactaagggcggcacacactttcattcccttgttcagatg
ctcaacaatgtgtag
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