Hippoglossus stenolepis (Pacific halibut): 118119185
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Entry
118119185 CDS
T08308
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118119185 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118119185 (polr1b)
Enzymes [BR:
hsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118119185 (polr1b)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
118119185 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
118119185
NCBI-ProteinID:
XP_047198332
LinkDB
All DBs
Position
12:complement(6252219..6259784)
Genome browser
AA seq
1134 aa
AA seq
DB search
MDFSTKWSNLPTGPSLKNLTQGGFGVLKETQHEAVQDLTKAQIESFDQAVTSGLIRVVQA
IPPLEFAVKNDRISLSFVEASINNPVVAKGNVCRDMRVFPAECRGRRCSYKGKLVADVSW
SVNGVPKGIIKQSLGQVPIMVKSKLCNLHAMSPKELVEHHEESEEMGGYFIVNGIEKVIR
MLIMPRRNYPIAMSRPKWKSRGQGYTQYGISIHCVKEEHTAINMNLHYLENGTVMLNFVY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREDNSFYKSCASEMLRIVMEEGCTTRSKV
LSYLGERFRVKMNLPEWYTNEQCANYLIEECICIHLKSDVEKFYLLCLMTRKLFTFAKQE
CMEENPDSIMCQEVLTPGQLYLMFLKERVAAWLVSVKLAFDKRGSRLSGGWNAENMIKLF
NMGSDVTKPFEFLLATGNLNSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCEIVAPTSSTTSLPALLCSLGVC
PVDGSPGQPFSDCYPVVLDGAVVGWLETELAPVVVDSLRRFKVLRTNKIPPWTEIVLVPK
TGKASLYPGLFLFTTPCRMVRPVRNLAHGKEELIGTFEQLYTNVGIFEGEIEPGVTTHQE
LFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFTDRSDNKLYRLQTPQSP
LVRPYMYDHYNLDNYPSGTNAIVAVISYTGYDMEDAMILNKSSWERGFAHGSIYKTELVD
LADKVRGEDGVVFGTKPGDPKVDGKLDADGLPHIGSTLKYGDPYYSYINLNTGATSINYY
KSQESSVVDNIKICSNDNGSGYFKRVCITIRVPRNPTIGDKFASRHGQKGILSRLWPTED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGSLHGLSHDATPFTFSEENSALEY
FGKMLRAGGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGSSFLLQDRLFNCSDRSVAQVCIDCGSLISPLL
EKPPPYWSSMRHRKTVCTLCGKSDSIDSVSVPYVFRYFVAELAAMNIKVKLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggacttttctacaaagtggagtaatttacccacaggcccgagtctgaagaacctgacc
cagggcgggttcggtgtcctgaaggagactcaacatgaggcggttcaggacctgacgaaa
gcccaaatcgagtctttcgaccaggctgtcaccagcggactgatccgggtcgtacaggcc
atccctccgctggagttcgctgtaaaaaatgacaggatcagcctttcgttcgtcgaggcc
tccatcaacaacccggtggttgccaaagggaacgtctgcagggacatgagggtgtttcct
gcagagtgcaggggcaggagatgctcgtacaaaggaaagctggtggctgacgtcagctgg
tcggtcaatggagttcccaaaggcatcatcaaacagtccctgggtcaggtgccaatcatg
gtgaagtccaagctgtgcaacctccatgctatgtctccgaaagagctagttgaacaccat
gaagaatcagaggaaatgggaggttatttcatcgtgaatggaatcgagaaggtgatccga
atgctgatcatgccgaggaggaactatccaattgccatgtcaagacctaagtggaagagc
aggggccagggctacactcagtatggtatatctatacattgtgtgaaggaagagcacaca
gccatcaacatgaaccttcattatctggaaaacgggactgtgatgctgaacttcgtctac
caaaaagagctcttcttcctcccactaggctttgcactcaaggccttggtggacttcaca
gacttccagatctaccaggagctgatcaagggccgcgaggacaattccttctacaagagc
tgtgcatccgagatgctgcgtatcgtcatggaggagggctgcaccacccgcagcaaggtg
ctcagttacctcggagagcgcttcagggttaagatgaaccttcctgagtggtacacaaac
gagcagtgtgccaactacctgatagaggagtgcatctgtatccacctgaagtccgatgtg
gagaagttctacctgctctgtctgatgacgaggaagcttttcacatttgccaagcaggag
tgcatggaggagaaccccgacagcatcatgtgtcaggaagtgctcactcctggtcagctc
tacctcatgttcctgaaggagagagtggctgcctggctggtgtctgtcaagctggccttt
gacaagagaggcagcagactgagtggaggatggaacgctgaaaacatgataaagcttttc
aacatgggcagtgacgtaaccaaaccttttgaatttctgctggctactgggaacctcaac
tccaagacaggtctcggcatgctgcagaacacaggtctgtgtgtcgtagccgacaagctc
aacttcatccgctacctgtcccacttccgctgcgtgcacagaggagcagcgttcgccaag
atgaggaccacctctgttcgtaagctgctgcctgagtcctggggcttcctgtgtcctgtc
cacaccccggacggagagccttgtggcctcatgaatcacatgacagccagctgtgagatc
gtggcaccaacctcgtccaccacatccctgcctgctctgctatgttccctcggtgtttgt
cccgtggatggatctcctggtcaacccttttcagactgctaccctgtggtgcttgacggg
gccgttgtcggctggttggagactgaattagctccagttgtggttgactcgctacgtagg
ttcaaggtactgagaacaaacaagatccctccctggactgagatcgtcctggttcccaaa
acaggcaaggccagcttgtacccaggcctgttcctcttcacaacgccctgtcgtatggtg
cggcccgtacgcaatttagctcatggaaaagaagagttaattggcacctttgaacaactt
tataccaatgtgggcatctttgagggggagatcgagcccggtgtgaccacacaccaggaa
ctgttccctcacagtatgctgagcgtggtggccaacttcatcccctactcagatcacaac
cagagtcctaggaacatgtaccagtgtcagatgggtaagcagactatgggttttcccctg
cactcgttcacggaccgctcagataacaagctgtaccggctccagaccccacaaagcccg
ctggtcaggccctacatgtacgaccactacaacctggacaactaccccagcggcacaaac
gccattgtggccgtcatatcctacacaggctatgacatggaagatgctatgattttgaac
aagtcctcgtgggagagaggcttcgcccatggaagcatttacaagactgagctggtggat
ctggcagacaaggtgaggggagaggacggcgtggtgtttgggaccaagccaggtgatcct
aaggtggatggaaaactggacgctgatggactacctcacattggatcaacacttaaatat
ggagacccctactacagctacatcaacctcaacacgggtgccacctccatcaactactac
aagagccaagaatcctctgtagtcgacaatataaagatctgcagcaacgacaacggctca
ggctatttcaaacgagtttgcatcaccatacgagtgccacgaaaccccaccatcggtgac
aagtttgccagtcgccacggtcagaaaggcatcctgagccgcctgtggccgactgaggac
atgcccttcacagagagcggcatgactcccgacatccttttcaacccccacggcttcccc
tcccgtatgaccatcgggatgctcatcgagagcatggccggcaagtccggctccctgcac
gggctgagccacgacgccacacccttcaccttctctgaggagaactctgctctagagtac
ttcggtaaaatgctccgggctggaggttacaactattacggcacagagcggctctacagt
ggcctgagcggtctggagcttgaggccgacatcttcatcggggttgtctactaccagcgg
ttgcgtcacatggtctctgacaaatttcaagtgaggaccacgggagcgcgagacaaggtg
accaaccagccggtgggagggaggaacatccagggaggcattcgttttggagagatggag
cgagacgccctgctggcgcacggctcgtccttcctgcttcaggatcggctcttcaactgc
tcggaccgatcagtagctcaggtgtgcattgactgtggcagcctcatctcccctctgtta
gagaaaccgcctccctactggtcgtccatgcgccaccgtaagactgtgtgcaccctgtgt
ggcaaaagtgactctattgactcggtgtctgttccttacgtcttccgctactttgtagcc
gagctcgcagcgatgaacatcaaagtaaaattagatgtaaagtaa
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