Hippoglossus stenolepis (Pacific halibut): 118120021
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Entry
118120021 CDS
T08308
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118120021 (scn1laa)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
118120021 (scn1laa)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
Na_trans_cytopl
GPHH
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
118120021
NCBI-ProteinID:
XP_047198544
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Position
13:12348784..12374651
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AA seq
1729 aa
AA seq
DB search
MIMCTIITNCGFMTLSGQPEWTKNVEYTFTGIYTFEFLVKVLALGFCLGKFTFLRDPWNW
LDFTVIVMAYVTEFVDLGNLSALRTFRVLRAIKAISVIPGLKTIVGALFQSMKKLADVMI
LTVFCLSVFALIGLQLFMGHLKQKCVRIPSNDTLNNMTETFNMTAHMDNKSNYYYLTGKR
DPLLCGHGSEAGQCPEGYNCTKAGQNPDYGYTSFDSFGWAFLSLFRLMTQDYWENLYQQT
LRAAGKPYMMFFVLVIFLGSFYLINLILAVVAMSYEEQSQATIKEAKEKEEEYKAMMEQL
KRQQDVETAAITASAETGEVSDKADGTASSSDVSKLSSKSAKDRRNRRRKRKEEEGKEAE
EKLPKSESQDSIKKGRCRFSVEANLLNYDMKCSSAHQADTTDTGYRQAIGGPNQEFMDFL
EGPEARQRAHSTASVITSTMEELEESMQKCPPCWYKFAHTFLIWECCPVWLEIKKFVKLI
VMDPFGDLAITICIVLNTLFMAMEHSPMSPGFSDMLTVGNQVFTGIFTAEMVLKIIALDP
YNYFQKGWNIFDAIIVTSSLIELSLTKVGGVSVLRSFRLLRVFKLAKSWPTLNKLIKIIG
NSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYKDCVCKISPDCTLPRWHMNDFFHSFLIV
FRVLCGEWIETMWDCMEVAGKTKCLIVYMMVMVIGNLVVLNLFLALLLSSFSADNLAAQE
VEGEINNLQIAIGRIHRGIAFTKSMLRSSCNSICLRDKKKAKSDDKSLDELHKPMGPNGI
PNHTIKDFPKNGNGDVTGVDKNGDKYIVSSKSDDSIMCFINNPSLTVTVPIAVGESDFEF
LNTEDFSSASSDPAGCPVIGEDDGQLSTSEGSTVDGLAAGEGDSLEFELEESMYPDGCFP
EVCVKRFKCCQVNVDVGWWKVWWTLRKTCYRIVEHNWFESFIIFMILLSSGALAFEDVYI
EKKKNIKTMLEFADKIFTYIFILEMLLKWVAYGFAKYFTNAWCWLDFLIVDVSLVSMVAN
LMGYSEFGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIFNVLLVCLIFWLIFS
IMGVNLFAGKYYHCVNRTTGYRFLSSVVNNKTECSALGNDTRWKNVKINFDNVGMGYLAL
LQVATFKGWMEIMFAAVDSRKAGEQPEYEINMLMYLYFVVFIIFGAFFALNLFIGVIIDN
FNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPSSKIQGYIFDFTTKQAFDV
VIMVLISLNMVTMMIETEDQSDAKKKALEKINIVFICIFSGECLLKMISLRHYFFTNGWN
IFDFIVVILSIIGCFLADIIEKYFVSPTLFRVIRLARIGRILRLIKSAKGIRTLLFALMM
SLPALFNIGLLLFLVMFIYAIFGMSNFAYVRRESGIDDLFNFETFGNSMICLFQITTSGG
WDGLLAPMLNKNDDDCNKTSEHPGSSVKGDCGNPAVGITFFVSYIIICFLIVVNMYIAVI
LENFGVATEESTDPLSEDDFEMFYEVWERFDPHVSQFMEYNKLSDFADDLDPPLRIAKPN
KLELMSMDLPMVSGERIHCLDILFAFTKRVLGEGGEMDVLRGQMEERFMASNPSKVSYEP
ITTTLRRKNEEVSAVVIQRAYRLYAKNNPASKPSDEPSDDIQKNETLIDNEEVITDELKR
KSSTDKSELAPSSASQLSCDGVTTNGKNKYEKDKSEKEVEGKDVPEQDK
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atgatcatgtgcaccatcatcaccaactgtggatttatgacactgagcggacagcctgag
tggacaaagaatgtggagtacacgttcactggcatctatacctttgagttcctcgttaaa
gttttagctctagggttctgtttaggaaagttcacgtttctaagagatccctggaactgg
ctggatttcactgtcattgttatggcgtatgtaacagagtttgtggacctgggcaattta
tcagctcttcgcacgttcagagtgctcagagctatcaaagctatttcagttatcccaggc
ctgaagaccattgttggtgcgttgttccagtcaatgaagaagcttgccgacgtgatgatc
cttactgtcttctgcttgagcgtcttcgccctcatagggttgcagttgttcatgggtcat
ttaaagcaaaagtgtgtccggattccatcaaacgacacattaaacaacatgacagagacg
ttcaacatgaccgctcacatggacaacaagagtaattattattaccttactggcaagaga
gatccactgctttgtggacatggcagtgaagctgggcagtgtccggagggttacaattgc
acgaaagcgggacaaaacccagactatggctacaccagttttgactcatttggttgggcc
ttcctctcactgttcagactgatgacacaggattactgggaaaacctttatcaacagacg
ctgcgtgcagcagggaagccctacatgatgttttttgtgctggtgatattcctcggctcc
ttctacctgatcaacctgatcttggctgtagtggccatgtcctatgaggagcagagccag
gccaccatcaaggaggccaaggagaaggaggaggagtacaaggccatgatggagcagctg
aaacggcagcaggacgttgagacagcagctatcacagcttctgctgagaccggggaggtc
agtgacaaagctgacggcactgcgagctcctccgatgtatctaagctcagctccaaaagt
gccaaagacagacgcaacaggcggaggaaaagaaaggaggaggagggcaaagaggccgaa
gagaagcttcctaagtcggagtcgcaggacagtataaagaagggtcgctgccgtttctcc
gtggaggcaaacctgctcaactatgatatgaagtgctcgtccgcacatcaggctgacacc
actgacacagggtacagacaggccattgggggaccaaaccaggagtttatggacttccta
gagggcccagaggccagacagagagcccatagtacagccagtgtcataaccagcaccatg
gaggagcttgaagagtccatgcagaagtgtcctccttgctggtacaaatttgcccacacc
ttcctcatctgggagtgttgtccagtctggctagagatcaagaagtttgttaaattaatt
gtcatggacccatttggagacctagccatcaccatctgcattgtactcaacacattgttt
atggccatggagcattctccaatgtccccaggtttttccgatatgctgactgtgggcaac
caggtatttactggcatcttcactgctgaaatggtcctcaagatcattgcgttggaccca
tacaattacttccagaaagggtggaatatctttgatgcaatcattgtcacttcaagcttg
attgagctgtctttgacaaaagtgggtggcgtgtcggttctgaggtccttcagactgctg
agagtgttcaagttggctaaatcatggcccactctcaacaaactgatcaaaataattggt
aactcagtgggggctctgggcaacctgaccctggtactggccattatcgtcttcatcttt
gccgtggtgggcatgcagctgtttggaaaaaactacaaggactgtgtgtgtaaaatctct
cccgactgcactctgccccgttggcacatgaacgacttcttccattcattcctcattgtg
ttccgagtgctttgtggagagtggatagagaccatgtgggactgtatggaggtggctggg
aagaccaagtgcttgattgtctacatgatggtcatggttattggaaacctggtggtgttg
aatctgttcctggctctgctgctgagctcattcagtgccgacaacctggcagcacaggaa
gttgaaggcgagatcaacaacttgcagattgcaattggacgcattcacaggggcatagcc
ttcaccaagtccatgctcaggagcagctgcaacagcatctgtctcagggataagaagaaa
gcgaagagtgatgacaaatctctggatgagctccacaaacctatggggccgaacggcatc
cccaaccacaccatcaaagacttccctaagaatggcaacggggacgtgaccggggtggac
aaaaatggagacaagtacatcgtcagtagcaagagcgatgattctatcatgtgtttcatc
aacaatcctagtctgaccgtcactgttcccatcgctgtgggcgagtctgactttgaattc
ctcaacacggaggacttcagcagtgcctcatctgacccggcaggatgccctgtgattgga
gaggacgacgggcagctcagcacctccgagggcagcaccgtggacggtttggcggctggg
gagggagactctcttgaattcgaacttgaggaatctatgtatcctgatggttgctttcct
gaagtttgtgtgaagaggttcaagtgttgtcaggtgaacgtggacgtgggctggtggaag
gtgtggtggacgctaagaaagacctgttaccggatagtggagcacaactggttcgagagc
ttcatcatcttcatgatcctgctcagcagtggagctctggcgtttgaagatgtctacatt
gagaagaagaagaacattaaaaccatgttggagtttgccgacaaaatcttcacctacatc
ttcattcttgagatgctgttgaagtgggtggcatatggctttgccaaatacttcaccaat
gcctggtgctggctggacttcctcattgttgacgtgtcactggtcagcatggtggccaac
ctcatgggatattctgaatttggtgccatcaagtctctgagaaccctgcgagcattgagg
cccctgagagccttgtcacgattcgagggcatgcgggtggtggtcaatgccctgctggga
gccatcccttccatcttcaacgtgctgctggtatgtctcatattttggctcatcttcagc
atcatgggagtcaacctgtttgcggggaagtactaccattgtgtcaacagaaccacgggg
taccgtttcctttcatcagttgtgaataacaagacagagtgttcggccctcggcaatgac
actcgctggaagaatgtcaaaatcaactttgacaatgttggtatgggttacctcgcactg
ctgcaagtagctacatttaagggctggatggaaatcatgtttgctgctgtggactctcga
aaggcaggggaacaacctgagtatgagatcaacatgcttatgtacctgtactttgttgtc
ttcatcatatttggagccttcttcgcactcaatctcttcattggtgtcatcatagacaat
ttcaatcagcaaaagaaaaagtttggaggtcaggacatcttcatgactgaagaacagaag
aaatactacaatgccatgaaaaagctgggctcaaagaaaccacaaaaacctattcctaga
ccatcaagcaagattcaaggatacatctttgacttcaccacaaaacaagctttcgatgtt
gtaataatggttctaatatcgctcaatatggtcaccatgatgatagaaactgaggaccag
tcagatgcaaagaaaaaggctctcgaaaaaattaacattgtgtttatttgcatcttcagt
ggagaatgtttgttgaagatgatctctctccgtcattactttttcacaaatggttggaat
atatttgatttcatcgtggtcatcctttcaatcattggttgctttctcgccgatattata
gagaagtattttgtttcgccaaccttgttccgagtcatccggttggctcgcattggacgc
atcctccgccttattaaaagcgccaaaggaatccgcacactcctgtttgccttgatgatg
tcacttcctgccttgttcaacatcggtctcctgctcttcttggtgatgtttatttatgcc
atcttcggcatgtcaaactttgcgtacgtcaggagagagtcaggcattgacgatcttttc
aattttgagacgtttggcaacagcatgatctgtctgttccagatcaccacctcagggggg
tgggatggcctactcgctcccatgctcaacaaaaatgatgatgattgtaacaaaaccagc
gagcatcctggcagctctgttaaaggagactgtggaaatcctgctgtggggattactttc
ttcgtgagctacattataatctgtttcctgattgtggtgaacatgtacattgcagtcatc
ctggaaaacttcggcgtggccaccgaggagagtacggacccactaagcgaggatgatttt
gaaatgttctatgaggtgtgggaaaggtttgatcctcatgtgtcacagttcatggagtac
aataagctgtccgacttcgcagacgacctggacccgccgttgcgcatagccaagcctaac
aagctcgagctgatgtccatggatcttcccatggtgagcggcgaacgcattcactgcctg
gacatcctgtttgcattcacaaaacgtgttctaggtgagggtggggagatggatgtcctg
agggggcagatggaggagcgcttcatggcctccaatccctccaaagtgtcctacgaaccc
atcactaccactctccgccgcaaaaacgaggaagtgtcggccgtcgtcatccagagagcg
tacagactgtatgcaaagaacaatcctgccagtaagccctctgacgaacccagtgatgac
attcaaaagaatgaaacgctcattgacaatgaggaggtcatcacagacgaactgaaaaga
aaatctagcactgataaaagcgaactagccccttcgtctgcctctcaactgtcatgtgac
ggcgtgacgacaaacgggaagaacaaatatgaaaaagacaaaagcgaaaaggaggttgaa
ggcaaagatgtcccagagcaagataaatga
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integrated database retrieval system
