Hippoglossus stenolepis (Pacific halibut): 118122116
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Entry
118122116 CDS
T08308
Symbol
hlcs
Name
(RefSeq) biotin--protein ligase isoform X1
KO
K01942
biotin---protein ligase [EC:
6.3.4.9
6.3.4.10
6.3.4.11
6.3.4.15
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp00780
Biotin metabolism
hsp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00780 Biotin metabolism
118122116 (hlcs)
Enzymes [BR:
hsp01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.4 Other carbon-nitrogen ligases
6.3.4.9 biotin---[methylmalonyl-CoA-carboxytransferase] ligase
118122116 (hlcs)
6.3.4.10 biotin---[propionyl-CoA-carboxylase (ATP-hydrolysing)] ligase
118122116 (hlcs)
6.3.4.11 biotin---[methylcrotonoyl-CoA-carboxylase] ligase
118122116 (hlcs)
6.3.4.15 biotin---[biotin carboxyl-carrier protein] ligase
118122116 (hlcs)
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Gene cluster
GFIT
Motif
Pfam:
BPL_LplA_LipB
BPL_N
BPL_C
Motif
Other DBs
NCBI-GeneID:
118122116
NCBI-ProteinID:
XP_035034473
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Position
15:176889..206008
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AA seq
945 aa
AA seq
DB search
MLITLCYVYMWVRFHKCYSVLIRNSLSRLKGSSFSFSFCSSSPSAPATATPAGVQADARR
YLGSLPPEDIVFLQLGDKAVYLTDPQAGQGQPKDWMWPTVQCPEACDDLSKWTVLLGSSL
VRGPQIENISFIIEATGYRVGCHSRHTSNKKVLKWSDYCLPLACSPGQPFRVVAQTTVDN
FSRLGVAFLEGCLQLDNGLLPSKIVPVVLQESTLSELLEKQCPQSPKTVTSQWLCCTQTK
EGVVEPLPCNLLADHRHTQSHKGSLLLTPQAKRRTEERRGSEPLQGTQDIRLVGDSEDHS
MGNNHHMESHGHHLHLSSCHECLQLENSTIISVKYASAENIPDLPDDNSVELDSRAKTLD
EHHQDTGGFFGQSGGFDCNNKPPNVLVYTDGCQERFQTVCQLLSECIDMENHVIYHLQPQ
QALSHPWMDNTRLLVVAEEEALTPQLQTRFLTYLSQGGRVLGLTSTLCPAGLCLEVRERQ
RMVSRLNFIKEDSTELELSVLASGNFYVRDIQGGGEVELWGELKGEVPHQRDMVIVRITH
EQDGGQAVLCQVHLEIAPENLTTESFDELKVSNALRYEVLTEILISLGLSCELNHDLTPT
PIHLLAISLEAKAYFLKWLETQADQNGFLTLSKHSLRMVSCSELQDGSFLHEGSLDLVTD
SSESQSWAEFRMETYRKNLQTSLLGHNLFYTEMASSTMDLLEGLSLHLPKDVGLIAVAGR
QRQGRGRGKNTWLSPLGCAMFTLKIQVELSSRLGQRIPFLQHLAALAVVEAVRTLPGYQD
IDLRVKWPNDIYYSNLMKLGGVLVTSTVIGSTFHLLIGCGFNVTNSNPTVCINDLIQQYN
TQHNCSLQPLCCAQLIARTVSCLEVLISSFQHGGPDAILPTYYKRWLHSGTKVHLWSEDG
IEAEVFGLDHNGFLQVHSEEHGVVSVEPDGNSFDMLKNLVVIKQR
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgttaataaccttgtgctacgtctacatgtgggtgcggtttcacaagtgctactcggtt
ctgatccgcaacagtctttccagactaaaaggcagcagctttagcttcagcttctgctcc
agctcgccctcagctccagccacagcaacgccagctggagtccaagcagatgcacggcgg
tatctcggctcacttccacccgaggacattgtcttccttcagctgggagacaaggctgtc
tatctcacggatcctcaggctggtcagggacagccaaaggactggatgtggcccactgta
caatgcccagaggcatgtgatgacctcagcaaatggactgtgctgttggggtcctctctg
gttcgtggtccacaaatagagaatatttcattcatcatagaagcaacaggatacagagtg
ggctgccattctcgtcacacatcgaataagaaagtgctgaagtggtccgattattgtctt
cctttggcctgcagccctggccagcccttcagggtggtggctcagaccactgtcgataac
ttcagtcggctgggagttgcttttctagaaggttgccttcagctagacaatggacttttg
ccttcaaagatagtccctgttgtcctccaagaatctactctcagtgagctgttggagaaa
caatgtccacagagcccaaagactgtgacatctcaatggctctgttgtacccagactaaa
gagggtgttgttgaacctttaccctgtaacctattagctgaccaccggcacacacagagc
cataaaggcagccttctcctcactccacaggcaaagaggaggactgaggaacgaagaggg
tcagagccactccaaggtacccaggatataagactggttggtgactctgaagatcattcc
atggggaataatcatcatatggagagccatggacaccacctccacctgtccagctgccat
gaatgtttgcagttggaaaacagcaccatcatctctgttaaatatgcatcagcggagaac
attccagaccttcctgatgataactcagttgagctggatagtagagctaagactttggat
gaacatcaccaagacactggaggcttttttggtcaaagtgggggttttgactgtaataac
aaaccaccaaatgttctggtgtacacggatggttgccaggagcgttttcaaactgtttgc
caacttttatcagagtgtatagacatggaaaaccatgtaatatatcatctccaaccacag
caggcgctgagccatccatggatggacaacaccaggctcctggttgtggcagaagaggaa
gccctgaccccccaacttcagacccgctttctcacctaccttagccagggtggcagggtc
ttggggcttacatctaccctgtgccctgcaggcctttgtctggaagttagggagaggcaa
agaatggtcagcaggctgaacttcattaaggaagacagcacagagctggaactgagcgtg
ttggcgagtgggaacttctatgtcagggatattcagggaggaggggaagtggagctttgg
ggagagctgaaaggggaggtccctcatcagagggatatggtaatcgtcagaattacccat
gaacaagatggtgggcaagctgtcctttgtcaggtccacctggaaattgcacctgagaat
ttgacgactgaaagttttgatgaactgaaggtcagcaatgcactgcgttatgaagtcttg
acagaaatcctcatatctttgggactcagctgtgaactaaaccatgatctgactccaacc
ccaattcacctgctggccatctctctggaggcaaaggcctacttcctgaagtggctggag
acacaagcagatcaaaatggcttcctcacattgtccaagcactccctgaggatggtatcc
tgctctgagctgcaggatggttcttttttgcatgagggttctctggacctggtcaccgac
tcttctgagtctcagagctgggcggagttcagaatggagacctacaggaagaacctacag
accagtctgctcggacataacctgttttacactgagatggcatcgtctacgatggacctg
ttagaagggttaagtctacatttaccaaaagatgtgggtttaatagcagtagctggtcga
caaagacagggaagaggtcggggcaagaacacctggctcagccctctgggttgtgctatg
ttcactctaaagatccaagttgagctgagctctaggctcggacaaaggattcccttcctc
cagcacctagctgctctggcagtggtggaggctgttcgcacactgcctggataccaggac
atagacctgcgagtgaaatggcccaatgacatctactatagtaacctgatgaagcttggg
ggagtactggtgacttccactgttataggatcgacttttcatctgctcataggctgtggg
ttcaatgtgacaaacagcaatccaactgtctgcatcaatgacctgatccagcaatacaac
acacagcataactgcagtctgcaaccgctttgctgcgcccaactcattgctcgcactgtc
agctgtctggaggtcctcatcagcagcttccaacatggaggcccagatgcaatcctgccc
acatactataagagatggctacacagcgggaccaaggtgcatctttggagtgaggatgga
atagaagctgaggtgttcggactggaccacaatggcttcctccaagtgcacagtgaggag
catggcgtggtctcagtggagcctgatggaaactcctttgacatgctgaagaacctggtg
gtcatcaagcagcgctaa
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